DY258247

Overview
NameDY258247
Unique NameDY258247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length988
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:1..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.214e-89
Identity = 172/245 (70.20%), Postives = 191/245 (77.96%), Query Frame = 1
Query:   97 SMPFSAAFSSPLRHFTQIKTCPXXXXXXXXXXXTPTNSI---KSSIGSAKPGFLQHGLFSQ-SSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 819
            SM FS  F +PLR F Q +T             TP+ S+   KSSI S+K  F Q G   Q SSN P    K RSF V+A A  +K++YDFTVKDID KDV LSKFKGKVLLIVNVASRCGLT SNY+ELSHLYE +K +G E+LAFPCNQFG QEPGSN EIK+FACT+FKAEFPIFDKVDVNGP TAPVYQFLKSS+GGF GD+VKWNFEKFLVDKNGKV+ERYPPTTSPFQIEKDIQKL+ A
Sbjct:    3 SMAFSTTFFTPLRDFNQPRT-----------NSTPSTSLPFTKSSIASSKSPFFQLGFSQQASSNFPIVPSKTRSFSVNAKAIKDKTIYDFTVKDIDKKDVSLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 236          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 2.531e-87
Identity = 157/204 (76.96%), Postives = 175/204 (85.78%), Query Frame = 1
Query:  208 SIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 819
            S+K S G +    L +G   +S   PGF  K R F V A AA EK+++DFTVKDIDGKDV L+KFKGKV+LIVNVASRCGLT SNYSELSHLYEKYKTQGFEILAFPCNQFG QEPGSN EIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y+FLKS+AGGFLG L+KWNFEKFL+DK GKV+ERYPPTTSPFQIEKDIQKL+ A
Sbjct:   33 SLKFSTGISNFANLSNGFSLKSPINPGFLFKSRPFTVQARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLLAA 236          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 9.951e-84
Identity = 151/201 (75.12%), Postives = 171/201 (85.07%), Query Frame = 1
Query:  208 SIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 810
            S++ S  ++K     +G+  +SSN   F VK ++F V+A AA EKS++DFTVKDIDG DV L KFKGK LLIVNVASRCGLT SNYSELS LYEKYK QGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y+FLKS+AGGFLGD++KWNFEKFLVDK GKV+ERYPPTTSPFQIE    KL
Sbjct:   30 SLRFSTRTSKTRNPSNGVSVKSSNSHRFLVKSKNFSVYARAAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIEVPNSKL 230          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 2.631e-68
Identity = 129/204 (63.24%), Postives = 153/204 (75.00%), Query Frame = 1
Query:  202 TNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            ++S      SAKP F  H + S   +  G  + R    + A ++  KSLYDFTVKD  G DV LS +KGKVLLIVNVAS+CGLT SNY+EL+ LYEKYK  GFEILAFPCNQFG QEPG+N EI +FACTRFKAE+PIFDKVDVNG   APVY+FLKSS GG  GD +KWNF KFLVDK+G V++R+ PTTSP  IEKD++KL+
Sbjct:   26 SSSSSKRFDSAKPLFNSHRIISLPISTTGAKLSRSEHSM-AASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLL 228          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.556e-65
Identity = 117/160 (73.12%), Postives = 135/160 (84.38%), Query Frame = 1
Query:  334 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            ++ S++DFTVKD  G+DV LS +KGK+LLIVNVAS+CGLT SNY+ELS LY+KYK QG EILAFPCNQFG QEPG N +I+EFACTRFKAEFPIFDKVDVNG N AP+Y+ LKSS GG  GD +KWNF KFLVDK G V+ERY PTTSP  IEKDI+KL+
Sbjct:    5 SKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 164          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 5.134e-64
Identity = 116/158 (73.42%), Postives = 133/158 (84.18%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            KS++DF VKD  G DV LS +KGKVLLIVNVAS+CGLT SNY EL+ LYE+YK +G EILAFPCNQFG QEPG N +I EFACTRFKAEFPIFDKVDVNG N APVY++LKSS GG  GD +KWNF KFLVD++GKV++RY PTTSP  IEKDI+KL+
Sbjct:   10 KSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLI 167          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.548e-63
Identity = 112/158 (70.89%), Postives = 133/158 (84.18%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFLVDK G V++RY PTT+P  +EKDI+KL+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.328e-63
Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +S+YDFTVKD  GKDV LS +KGKVL+IVNVAS+CGLT SNY++++ LY+KYK QG EILAFPCNQFGGQEPG+  +I++  CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFL+DK G V++RY PTTSP  +EKDI+KL+
Sbjct:    9 QSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLL 166          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.347e-63
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++++ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFLVDK G V++RY PTT+P  +EKDI+KL+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.347e-63
Identity = 113/163 (69.33%), Postives = 136/163 (83.44%), Query Frame = 1
Query:  325 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            ++A  KS+++F V+D  G DV LS +KGKVLLIVNVAS+CGLT SNY+E++ LYEKY+  G EILAFPCNQFG QEPGSN E+ EFACTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GG  GD +KWNF KFLVDK+G V++RY PTTSP  IEKD++KL+
Sbjct:    5 SSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLL 167          
The following BLAST results are available for this feature:
BLAST of DY258247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX1_PEA1.214e-8970.20Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_ARATH2.531e-8776.96Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX7_ARATH9.951e-8475.12Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX6_ARATH2.631e-6863.24Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_CITSI3.556e-6573.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR5.134e-6473.42Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY2.548e-6370.89Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC3.328e-6370.25Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC4.347e-6370.25Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL4.347e-6369.33Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DC04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258247 ID=DY258247; Name=DY258247; organism=Citrus clementina; type=EST; length=988bp
AGGGGCTCTTACATTTATATAACACGAAGTACACAACACAACTCTCTGTT
ACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGA
TGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAATC
AAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCC
TACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTC
AACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAA
CGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATA
TGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGT
TTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTG
ACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGAC
TCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAG
AGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAG
GCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGC
TCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTAGGCGACC
TTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTC
ATCGAGAGATATCCACCAACTACCTCGCCTTTCCAAATTGAGAAGGACAT
CCAGAAGCTTGTTGTGGCATGAATCTTGACTTGAGCTGCTTGGCCATGTC
TCAGATGTATCGACGAGATAGAAACTGAATATATGTATATGTATATTTTC
TGAATCGGCATCACATAGATGAATTTTTTCCTGCCTTCCCCTGAAATGTT
ATAGGTTTTTTAAATCCTAATAATTAAAGATTTTGTCC
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