DY258277

Overview
NameDY258277
Unique NameDY258277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig312 contig Ccv1_Contig312:337..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.159e-68
Identity = 119/134 (88.81%), Postives = 128/134 (95.52%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA  YE VYGEPI VKELA RVASYVHLCTLYWWL+PFGCGVILGGYDRDGPQLYMIEPSG+SY+YFGAA+GKGRQAAKTEIEKLKLSE+TCR G++EVAKIIYGVHDEAKDKAFELE+SW+CDESNRQHQKVP
Sbjct:   95 EAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNRQHQKVP 228          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.514e-68
Identity = 121/134 (90.30%), Postives = 128/134 (95.52%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EAT YESVYGE +PVKELA RVASYVHLCTLYWWL+PFGCGVILGGYDRDGPQLYM+EPSGISYRYFGAAIGKG+QAAKTEIEKLKLSEMTCR G+IEVAKIIY VHDEAKDKAFELEMSW+CDES R+HQKVP
Sbjct:   95 EATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKREHQKVP 228          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 5.385e-66
Identity = 116/134 (86.57%), Postives = 127/134 (94.78%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA  YESVYG+ +PVKEL++RVASYVHLCTLYWWL+PFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKG+QAAKTEIEKL LSEMTC+ GVIEVAKIIY +HDEAKDKAFELEMSW+C+ES R+HQKVP
Sbjct:   95 EARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKVP 228          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.864e-42
Identity = 78/134 (58.21%), Postives = 103/134 (76.87%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA  Y+S YG+PIP+K L+QR+ASY H+ TLY  ++PFGC + + G D+ GPQL+++EPSG    YFGA++GKG+QAAK E+EK+K SEMTCR  + EV++IIY VHDE KDK FELE+ W+  E+N  HQ VP
Sbjct:   95 EAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETNNVHQIVP 228          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.082e-42
Identity = 85/134 (63.43%), Postives = 103/134 (76.87%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EAT Y   YG  I  K L +R++++V L +LY  ++PFG  VILG  D++GPQLYMIEPSGIS+ YFG AIGKG +AAKTEIEKLKLSEMT R  + E AKIIY VHD+AKDKAFELE+SWVC+E+   H+ VP
Sbjct:   93 EATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWVCEETGNLHKFVP 226          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 4.590e-41
Identity = 86/135 (63.70%), Postives = 103/135 (76.30%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP
Sbjct:   95 EASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITNGRHEIVP 229          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.995e-41
Identity = 86/135 (63.70%), Postives = 103/135 (76.30%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP
Sbjct:   95 EASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 229          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.278e-40
Identity = 85/135 (62.96%), Postives = 102/135 (75.56%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +  +H+ VP
Sbjct:   95 EASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVP 229          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.278e-40
Identity = 85/135 (62.96%), Postives = 102/135 (75.56%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +  +H+ VP
Sbjct:   95 EASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVP 229          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EAT +   YG PIP   +A R+ +YV L T Y  ++PFG    +  YD +GP LYM+EP+G+ + Y GAA GKGRQ A+ E+EKL  S +  +  V E A+I+Y  HDE  +K  E+EM+WV  E+N  H  VP
Sbjct:   94 EATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVP 227          
The following BLAST results are available for this feature:
BLAST of DY258277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSA3_ORYSJ1.159e-6888.81Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_SPIOL1.514e-6890.30Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_ARATH5.385e-6686.57Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA3_DICDI1.864e-4258.21Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA3_ACACA7.082e-4263.43Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA3_BOVIN4.590e-4163.70Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA3_HUMAN5.995e-4163.70Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_RAT2.278e-4062.96Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE2.278e-4062.96Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_SCHPO8.980e-2946.27Probable proteasome subunit alpha type-3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DH05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258277 ID=DY258277; Name=DY258277; organism=Citrus clementina; type=EST; length=821bp
TGAAGCTACATTTTATGAAAGTGTATATGGCGAACCAATTCCTGTTAAAG
AACTTGCTCAACGAGTTGCTAGCTATGTGCATCTATGTACTCTATATTGG
TGGCTCAAACCTTTTGGATGTGGTGTAATTCTTGGAGGTTATGACAGAGA
TGGACCGCAATTGTATATGATTGAACCTTCTGGTATCTCCTATAGGTATT
TTGGAGCTGCAATTGGAAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAA
AAGTTGAAGCTTTCTGAAATGACCTGCCGATAAGGGGTCATTGAAGTAGC
CAAGATCATTTATGGAGTGCACGATGAGGCTAAGGACAAGGCCTTTGAAC
TGGAAATGAGCTGGGTCTGTGATGAATCAAACCGCCAGCATCAGAAGGTA
CCAGATGAGCTTCTTGAGGAAGCTAAGGCAGCCGCCAGAGCAGCGTTGGA
AGAGATGGATGCAGATTAGTGTAGCAGAGTTGATAATATTTGTTTACTAG
TTTGATGCCATTTCAGGGCTTGTCTTGGAATACTTGTCGCAACATTTTCA
AAATATTTAATAGATTGGTGGATTCTCTTGATGGTTGATGTCTTTACCGC
TGATAATTGCATCTATACTGTTAAAGTTTTTAAATTATCATTTGCTGGTC
TATGAGCTAGCGCCAAATTTTTTGGTGTTGAAACTTGAATTTATGCTTTT
GCTTAATGTGTTGGCATCTGGTCTAAAATTTAGATAGCACGAAATGTATG
GTTAGGAATGGGAAGAAAGGTTAGTCTGTTTATATCTCTCATTTATTTTT
ATTTTTACCACGTATTTTTAC
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