DY258278

Overview
NameDY258278
Unique NameDY258278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length603
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15270 contig Ccv1_Contig15270:329..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.734e-22
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            GGDMF S+P ADAIFMKW+   W+DD C  +++NCY+ALPA GK+I  E +LP+  + S  T++ + GDI +M  +   GK RTE++F  L     F   R     Y   ++EF K
Sbjct:  245 GGDMFVSVPKADAIFMKWICHDWSDDHCIKLLKNCYEALPANGKVIIVECILPEAPDTSAATKSKVHGDI-IMLAHNPGGKERTEKDFEALANWGWFSRFRKVCCAYHTWVMEFNK 359          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: COMT1_CAPAN (Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.314e-21
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            G DMF S+P ADAIFMKW+   W+D+ C   ++NCY+ALPA GK++  E +LP+  + S  T+  +  DI VM  +   GK RTE+EF  L   AGF   R     Y   ++EF K
Sbjct:  245 GRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNAVHVDI-VMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.022e-21
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLR 304
            GGDMF S+P  DAIFMKW+   W+DD C+ +++NCY+ALP  GK+I  E VLP+  + S  T+ ++  D+ VM  +   GK RTE+EF  L   AGF   R
Sbjct:  236 GGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVHVDV-VMLAHNPGGKERTEKEFEALAKGAGFKEFR 335          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: OMT2_CHRAE (Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            GGDMF S+P  DAIFMKW+   W+D+ C  +++NCY ALP  GK+I  E +LP+  + S  T+ ++  D+ +   +   GK RTE+EF  L  +AGF   + F   +   ++EF K
Sbjct:  225 GGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNGKVILAECILPEVPDSSLATKGVVHIDV-ITVAHNPGGKERTEKEFEALAKAAGFQGFQVFCNAFNTYIIEFSK 339          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            GGDMF S+P  DAIFMKW+   W+D+ C  +++NCY ALP  GK+I  E +LP+  + S  T+ ++  D+ +   +   GK RTE+EF  L  +AGF   + F   +   ++EF K
Sbjct:  225 GGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNGKVILAECILPEVPDSSLATKGVVHIDV-ITVAHNPGGKERTEKEFEALAKAAGFQGFQVFCNAFNTYIIEFSK 339          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: COMT2_POPTM (Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            GGDMF S+P ADA+FMKW+   W+D+ C   ++NCY ALP  GK+I  E +LP   + S  T+ ++  D+ +M  +   GK RT++EF  L   AGF         +   ++EF+K
Sbjct:  248 GGDMFVSVPKADAVFMKWICHDWSDEHCLTFLKNCYDALPENGKVILVECILPVAPDTSLATKGVMHVDV-IMLAHNPGGKERTDREFESLARGAGFKGFEVMCCAFNTHVIEFRK 362          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            GGDMF SIP ADA+FMKW+   W+D+ C   ++NCY+ALP  GK+I  E +LP   + S  T+ ++  D+ +M  +   GK RT++EF  L   AGF   +     +   ++EF K
Sbjct:  249 GGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDV-IMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            GGDMF S+PA DAI MKW+L  W+D  C  +++NCY ALP  GK+I  E VLP ++  + + + +   D+ +M  +   GK R E+EF +L   AGF   +A Y+      +EF K
Sbjct:  250 GGDMFASVPAGDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVFHVDM-IMLAHNPGGKERYEREFRELAKGAGFSGFKATYIYANAWAIEFIK 364          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.723e-20
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 2
Query:    2 GGDMFFSIP-AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLEFQK 349
            GGDMF S+P   DAI MKW+L  W+D+ C  +++NCY ALP  GK++  E VLP+ S+ + R + +   D+ +M  +   GK R E+EF +L  +AGF   +A Y+      +EF K
Sbjct:  253 GGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGVFHVDM-IMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: COMT1_ZINEL (Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.723e-20
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGF 292
            GGDMF S+P  DAIFMKW+L  W+D  C  +++NCYK+LP  GK+I  E +LP+  + +  T+ ++  D+ +M  +   GK RTE+EF  L   AGF
Sbjct:  240 GGDMFESVPKGDAIFMKWILHDWSDAHCLQVLKNCYKSLPENGKVIVAECILPEAPDTTPATQNVIHIDV-IMLAHNPGGKERTEKEFEALAKGAGF 335          
The following BLAST results are available for this feature:
BLAST of DY258278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
COMT1_CAPCH2.734e-2243.97Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
COMT1_CAPAN2.314e-2143.97Caffeic acid 3-O-methyltransferase OS=Capsicum ann... [more]
COMT1_COFCA3.022e-2147.52Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]
OMT2_CHRAE1.149e-2040.52Quercetin 3-O-methyltransferase 2 OS=Chrysospleniu... [more]
OMT1_CHRAE1.149e-2040.52Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]
COMT2_POPTM3.342e-2039.66Caffeic acid 3-O-methyltransferase 2 OS=Populus tr... [more]
COMT1_MEDSA4.364e-2040.52Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_MAIZE4.364e-2041.38Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
OMT1_ORYSJ9.723e-2041.03Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]
COMT1_ZINEL9.723e-2045.36Caffeic acid 3-O-methyltransferase OS=Zinnia elega... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DH07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258278 ID=DY258278; Name=DY258278; organism=Citrus clementina; type=EST; length=603bp
TGGTGGGGACATGTTTTTTTCCATTCCTGCCGCTGATGCTATCTTTATGA
AGTGGGTTTTAACTACATGGACTGACGATGAATGCAAGCTGATAATGGAG
AACTGTTACAAGGCTCTTCCGGCAGGAGGAAAACTGATTGCTTGTGAGCC
CGTGCTGCCTGATGATTCAAACAAGAGTCAAAGGACGCGTGCTCTCTTAG
AAGGGGACATTTTTGTAATGACCATCTACAGGGCCAAAGGTAAACACAGG
ACTGAACAAGAGTTTAACCAACTTGGTCTCTCTGCTGGTTTTCCACACTT
GAGAGCTTTTTATGTCGATTATTTTCACACTCTTCTTGAGTTCCAAAAGT
AATTTTAGTTTCTGGATCCTTAAAAGACTTGGGGAATATTTGTGATGGAC
TGTGGTTGCCTAGGATGGAATAACTTGCTATGAATTATAAATGTTGAGTA
GGCGGTTAGCGCTAGCTGCCTACCAAAAAAAAAAAAGAAACGATTTATCA
TTAACATAAATTATTGAGCTCATATTTCATAGACATGTATTTTGTATATT
GAGCTCACTCCATTGAACTCATATCTCATAGATATGTATTTCTTTTTCCT
TTG
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