DY258285

Overview
NameDY258285
Unique NameDY258285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1068 contig Ccv1_Contig1068:1..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.908e-48
Identity = 91/167 (54.49%), Postives = 120/167 (71.86%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 518
            +CYDEGKR A+T+   Y +  GVEVR+ARIFNT+GPRM ++DGRVV+NF+  AL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    + DP  RKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  229 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.908e-48
Identity = 91/167 (54.49%), Postives = 120/167 (71.86%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 518
            +CYDEGKR A+T+   Y +  GVEVR+ARIFNT+GPRM ++DGRVV+NF+  AL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    + DP  RKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  229 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.908e-48
Identity = 91/167 (54.49%), Postives = 120/167 (71.86%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 518
            +CYDEGKR A+T+   Y +  GVEVR+ARIFNT+GPRM ++DGRVV+NF+  AL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    + DP  RKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  229 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.908e-48
Identity = 91/167 (54.49%), Postives = 120/167 (71.86%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 518
            +CYDEGKR A+T+   Y +  GVEVR+ARIFNT+GPRM ++DGRVV+NF+  AL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    + DP  RKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  229 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.786e-46
Identity = 89/167 (53.29%), Postives = 118/167 (70.66%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 518
            +CYDEGKR A+T+   Y +  GVEVR+ARIFNT+G RM ++DGRVV+NF+  AL+ E LTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   + I+F P  + DP  R+PDI +AK LLGWEP V L +GL K ++ F + +
Sbjct:  227 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSREL 393          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.197e-46
Identity = 87/167 (52.10%), Postives = 119/167 (71.26%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 518
            +CYDEGKR A+T+   Y +  GVEVR+ARIFNT+GPRM ++DGRVV+NF+  AL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM      P NLGNP E ++++ A+++++ +    +I F    + DP  RKPDI +AK LLGWEP V L +GL K +  FR+ +
Sbjct:  230 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 50/159 (31.45%), Postives = 86/159 (54.09%), Query Frame = 3
Query:   15 LSCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV--GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGL 485
            LS Y   K T + L   Y +  G+ + I R F  YGPR   D        +   L+++PLT++GDG+Q+R F ++SD V+G+  ++   H+     N+G     ++L++  ++++     A + F+     +P N   DIS+AK+LL ++P  SL+ GL
Sbjct:  146 LSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHYDPATSLKDGL 302          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.355e-14
Identity = 53/159 (33.33%), Postives = 77/159 (48.43%), Query Frame = 3
Query:   24 YDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRK-----EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGL 485
            Y   K   + L   Y++  G+E RI R  N YGP      GR      A   RK     +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A++V    +    I   P  E     R  D +  KE LGW P + L++GL
Sbjct:  174 YGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGR--EKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAPNMRLKEGL 329          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.355e-14
Identity = 52/157 (33.12%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   24 YDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVTNFVAHALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGL 485
            Y   K   + L   Y +  G+E R+ R  N YGP      GR      F   AL   +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A++V    +    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  168 YGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMRLKDGL 323          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 52/159 (32.70%), Postives = 75/159 (47.17%), Query Frame = 3
Query:   24 YDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRK-----EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGL 485
            Y   K   + L   Y +  G+E R+ R  N YGP      GR      A   RK     +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A+++    D    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  175 YGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGR--EKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMKLKDGL 330          
The following BLAST results are available for this feature:
BLAST of DY258285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UXS1_RAT1.908e-4854.49UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.908e-4854.49UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.908e-4854.49UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.908e-4854.49UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE1.786e-4653.29UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
UXS1_XENTR5.197e-4652.10UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
YTCB_BACSU7.821e-1831.45Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
GME_ARATH2.355e-1433.33GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ2.355e-1433.12GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ4.017e-1432.70GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AA06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258285 ID=DY258285; Name=DY258285; organism=Citrus clementina; type=EST; length=873bp
GCATGACTCGTGTCCTAAGTTGTTACGATGAGGGAAAGCGAACTGCTGAT
ACCTTGACCCTGGACTACCACCGAGGAGCTGGCGTGGAGGTTAGGATTGC
TAGAATTTTCAACACTTATGGACCCCGTATGTGTATCGATGATGGTCGCG
TTGTCACTAATTTTGTTGCTCATGCTTTAAGGAAGGAGCCTTTGACTGTA
TATGGAGATGGGAAGCAGACTAGGAGTTTCCAATTTGTTTCTGATTTGGT
GGAGGGTCTGATGCGCCTCATGGAGGGAGAACATGTGGGTCCTTTTAATC
TTGGAAATCCGGGTGAATTCACCATGCTTGAACTTGCTCAGGTGGTCCAG
GAAACAATTGACCCAAATGCAAAAATAGAGTTCACGCCCAACACTGAACA
TGATCCACACAACAGGAAGCCTGATATCTCAAGGGCTAAAGAGCTTCTTG
GTTGGGAACCAAAGGTATCATTGAGGAAGGGTCTCCCCAAGATGGTCAAA
GATTTCCGGCAGCGTATCTTTGGTGACCACAAGGAAGGTGGTGCAGGTGC
CACCCCCGACACCACGTCATCGGCGTAACTTGGCCCGTGTACTTCTTAGA
GTGATCCAAGGAAGGGGAAATGTTTGGTTGAGAACCATTCCCCCTTTTTC
CTCCTCGAGAACAACATATGGTAGCCACATTCCACCGCAGCCGCGGTAGC
AGCAGATGAGCCCTTTGTTATCTTTATCCGGCTTAGATTTCCGGGTGCCC
TGATATAAATTCCTTTCCCAATTTCCCTGTAATTTCCCATGTAACCCTGA
TCCCTGACCCTGATAGACAGCAAGCATTACCGTTTCAATTTATCCCTTCC
TTATCCTCCGATTGCAAAAAAAA
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