DY259985

Overview
NameDY259985
Unique NameDY259985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1384 contig Ccv1_Contig1384:1..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_MICAN (Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.086e-13
Identity = 38/123 (30.89%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEV 674
            ++V +   P S + L +E+P    K+++++V+  L K V IPGFRPGK+P  +L+  +G + VK A +E +++  L  A+    G     + ++++KF ++   Y    +L++ V +DVAP +
Sbjct:    1 MKVIQEKLPASQIGLEIEIPAETTKNTHEQVVKNLAKSVNIPGFRPGKVPRQILLQRLGTKAVKAAVIEELIENCLESALKQ-EGIESLGNPQLLSKFEDLIAAYEPGKALTFSVSLDVAPTI 122          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROM5 (Trigger factor OS=Prochlorococcus marinus (strain MIT 9515) GN=tig PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.125e-13
Identity = 42/144 (29.17%), Postives = 73/144 (50.69%), Query Frame = 3
Query:  330 PNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKIRRML*KKIMDKPAHQAAEK 761
            P S + L +E+P   CK      +N + +  KIPGFR GKIP+ VL+  +G   +  + +E I+ ++   A+   +   L +   +V  F  + KN++   +L  ++  DVAP +K K   G  +  ++ +K   K   +A EK
Sbjct:   14 PQSRIALELEIPSNTCKSFVSETINSISRSAKIPGFRLGKIPKQVLIQRIGINQLYASALEKIIDKSWKEAIEMESIEPLSEP-ELVDGFESLLKNFNPEKTLKINLQTDVAPTLKLKKSKGLSV-EIIKRKFDPKSIDEALEK 155          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_GLOVI (Trigger factor OS=Gloeobacter violaceus GN=tig PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.388e-13
Identity = 39/134 (29.10%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKIR 707
            ++VT+   P S + L+VEV     K +Y++++ + M+  +IPGFRPGK P  +++ F G++ ++   +E+++  +L  A+   +  +L  ++++   F E+   Y     LS+   VDV PEV+     G  +R
Sbjct:    1 MKVTQEKLPRSQMGLNVEVEGEKSKQAYEKLVRDTMRTARIPGFRPGKAPRQLVLQFYGKERLRAQALENLIDSSLKEAIEQESIASL-GNLQLRDSFEELLGRYQPGEPLSFKAAVDVQPEVQLGTYTGLTVR 133          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROMS (Trigger factor OS=Prochlorococcus marinus (strain AS9601) GN=tig PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.568e-12
Identity = 39/131 (29.77%), Postives = 64/131 (48.85%), Query Frame = 3
Query:  312 VTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKI 704
            V  +P P S +   +E+P   CK      +N + +  KIPGFR GKIP+ VL+  +G   +  + +E I+ ++   A+   +   L +   +V  F  +   +S   SL   +  DVAPE+K K   G  +
Sbjct:    8 VKTTPLPQSRISFELEIPSETCKTCVNETINSISRSAKIPGFRLGKIPKQVLIQRIGITQLHASALEKIIDKSWQEALKIKSIEPLSEP-ELVDGFESLLAKFSPEKSLKVTLQTDVAPELKLKKSKGLSV 137          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROM9 (Trigger factor OS=Prochlorococcus marinus (strain MIT 9312) GN=tig PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.047e-12
Identity = 43/150 (28.67%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  312 VTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKIRRML*KKIMDKPAHQAAEK 761
            V  +P P S +   +E+P   CK      ++ + +  KIPGFR GKIP+ VL+  +G   +  + +E I+ ++   A+   +   L +   +V  F  +   +S   SL + +  DVAPE+K K   G  +  +   K   K   +A EK
Sbjct:    8 VKTTPLPQSRISFELEIPSETCKTCVNETISTISRSAKIPGFRLGKIPKQVLIQRIGITQLHASALEKIIDKSWQEALKIKSIEPLSEP-ELVDGFESLLAKFSPEKSLKFTLQTDVAPELKLKKSKGLSV-EISKTKFDPKSVDEALEK 155          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_TRIEI (Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.674e-12
Identity = 33/130 (25.38%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENG 695
            ++VT+   P S + L +E+   + K++Y++++ + ++   IPGFR GK+P ++L+  +G+  +K   ++ ++   L  A    + +A+     + T+F E+ K++     +++   VDV PE K +   G
Sbjct:    1 MKVTQEKLPASQISLEIEISPEMSKNAYEQIIKKYIRSANIPGFRKGKVPRNILIQRLGKNYIKAMALDDLINNCLEKAREQESIKAI-GQFELKTEFEELVKDFEPGKEMAFSAKVDVEPEAKVEDYKG 129          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROM2 (Trigger factor OS=Prochlorococcus marinus (strain MIT 9215) GN=tig PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.561e-12
Identity = 38/131 (29.01%), Postives = 64/131 (48.85%), Query Frame = 3
Query:  312 VTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKI 704
            V  +P P S +   +E+P   CK      ++ + +  KIPGFR GKIP+ VL+  +G   +  + +E I+ ++   A+   +   L +   +V  F  +  N+S    L   +  DVAPE+K K   G  +
Sbjct:    8 VKTTPLPQSRISFELEIPSETCKTCLNETISSISRSAKIPGFRVGKIPKQVLIQRIGITQLHASALEKIIDKSWQEALKIKSIEPLSEP-ELVDGFESVLANFSPEKPLKVTLQTDVAPELKLKKSKGLSV 137          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_ANAVT (Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.561e-12
Identity = 36/123 (29.27%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEV 674
            ++VT+   P S + L +E+   + + +Y++V+  L + V IPGFR GK+P  VL+  +G+ ++K A +E +L+  +  A+   +  A+    R+ + F ++  +Y     L++   VDV PE+
Sbjct:    1 MKVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTVNIPGFRKGKVPRQVLLQRLGKTHIKAAALEELLQDGIEQAIKQESIAAI-GQPRLRSSFDDLINSYEPGQPLTFTAAVDVEPEI 122          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_ANASP (Trigger factor OS=Anabaena sp. (strain PCC 7120) GN=tig PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.561e-12
Identity = 36/123 (29.27%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEV 674
            ++VT+   P S + L +E+   + + +Y++V+  L + V IPGFR GK+P  VL+  +G+ ++K A +E +L+  +  A+   +  A+    R+ + F ++  +Y     L++   VDV PE+
Sbjct:    1 MKVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTVNIPGFRKGKVPRQVLLQRLGKTHIKAAALEELLQDGIEQAIKQESIAAI-GQPRLRSSFDDLINSYEPGQPLTFTAAVDVEPEI 122          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROMA (Trigger factor OS=Prochlorococcus marinus GN=tig PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.780e-12
Identity = 37/132 (28.03%), Postives = 69/132 (52.27%), Query Frame = 3
Query:  300 ADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENG 695
            + +++     PNS + +  EVP   CK S++  L  L K   +PGFR GK+P+SV++  +G + ++ + +E +L++    A+   +   L +   +   F  + +N++   +LS  +  DVAP  K K   G
Sbjct:    4 SQLKIKTKALPNSRIAIEFEVPAQQCKTSFEDALTTLCKSANLPGFRKGKVPKSVILQQIGSKRIQASALEKLLEKIWKQALKEESIEPLCEP-ELAGGFEPLLENFNPEQTLSVTLETDVAPIPKLKTTKG 134          
The following BLAST results are available for this feature:
BLAST of DY259985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TIG_MICAN1.086e-1330.89Trigger factor OS=Microcystis aeruginosa (strain N... [more]
TIG_PROM54.125e-1329.17Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_GLOVI5.388e-1329.10Trigger factor OS=Gloeobacter violaceus GN=tig PE=... [more]
TIG_PROMS1.568e-1229.77Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_PROM92.047e-1228.67Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_TRIEI2.674e-1225.38Trigger factor OS=Trichodesmium erythraeum (strain... [more]
TIG_PROM24.561e-1229.01Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_ANAVT4.561e-1229.27Trigger factor OS=Anabaena variabilis (strain ATCC... [more]
TIG_ANASP4.561e-1229.27Trigger factor OS=Anabaena sp. (strain PCC 7120) G... [more]
TIG_PROMA7.780e-1228.03Trigger factor OS=Prochlorococcus marinus GN=tig P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259985 ID=DY259985; Name=DY259985; organism=Citrus clementina; type=EST; length=989bp
GCTCTTTTTTATCATTACACAATAAACCGGGAAAAAAAATGGAGCTTTGC
ATCACCAACTCAACAAGAATCCTCAACTTGAACTCTCTCAACAGAACAGG
GCTTCCTCTTTCTGTTTCTCTAAAGAACTCAACTGTTGAGTTCATGAACC
AAAACTACTTCAATTCTCAGAAACTGTCATCATTTTCCCGCCAAATTCAC
TTATATCTCCATCAACCTCAATTTCATCGAAGCCCAGTTCGTATCTTTGC
TTCTTCATCCTCCTCGGTGGCTCTGGGACCCGAGAAGGATCGGCTTCCGG
CTGATATCGAGGTCACAGAGAGTCCAGAACCCAATTCGACAGTGAGGCTG
AGTGTAGAAGTTCCAGAGGCGGTATGCAAGGATAGCTACAAAAGGGTCCT
TAATGAGTTGATGAAGCAAGTCAAGATTCCTGGATTTCGTCCTGGGAAGA
TTCCAGAGAGTGTTCTTGTAGGTTTTGTTGGGGAGCAGAATGTTAAAAAG
GCTACGGTTGAATCTATTCTGAAGAGGACCCTTCCTCATGCCATGACTTC
GGTGACTGGAAGGGCTTTGAGAGACTCCGTCCGCATTGTGACTAAGTTTT
CCGAAATGAAGAAGAACTATTCTTCTCCCAACTCTCTCAGTTATGATGTG
CTTGTCGATGTTGCGCCTGAAGTCAAATGGAAACCAGAAAATGGAACAAA
AATTCGAAGAATGTTGTAAAAAAAGATAATGGACAAACCCGCCCACCAAG
CTGCTGAAAAAGAAATAAGAACTCCCCATAAGTCCCCTGGGATCACTGAA
AATTCCCCCCCACACAAGACTACCGGGCCGTGACCTTGCCATCCCTGACT
AATCCCCCCCCACCACCAATTAAATAGAAATCCAACGCTCCCAATTATTC
CCCCATCGCAAAAACCCATCGCATTCTTTTTCAATAACAAAACTTGGGAC
ACAAAGTTTCCTCCAGGCTTCACCCAAATTCCCCAAACC
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