DY259989

Overview
NameDY259989
Unique NameDY259989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10230 contig Ccv1_Contig10230:71..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 6.307e-40
Identity = 104/238 (43.70%), Postives = 137/238 (57.56%), Query Frame = 2
Query:  293 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQVNSSAED---------SLNKCKEPGASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQIPCPDR-----NLFAQYQGPSY--YLSPFH*YPPARGGNPPGWSCKTEAKAGGKRGST 937
            MDWN K +  +   F+QE  P++  +D S     SS++K +FS DLKLG+   ++           SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+YH+ HKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEG+R+CRKRL+GHN+++    + P P+      N F  +QG     +    H +P     N P W     + A    GS+
Sbjct:    1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRR----RKPQPEHIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLN-PSWGNSLVSVAVAANGSS 230          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.777e-34
Identity = 84/186 (45.16%), Postives = 110/186 (59.14%), Query Frame = 2
Query:  293 MDWNLKP--AWDFTEFEQEAIPNVDAVDESS-------SRTKG-----NFSVDLKLGQVNS-SAEDSLNK----CKEP------GASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            MDW+LK   +WD  E E  A+PN+ A   ++       + ++G       SVDLKLG +    A D+L +     K P       AS  + P  + + KR R    G   Q  SC VDGC +DLS  RDYHR HKVCE HSKTP V++ G++ RFCQQCSRFH L EFDE +R+CRKRL+GHN+++
Sbjct:    1 MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRR 186          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.965e-33
Identity = 89/216 (41.20%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  293 MDWNLK----PAWDFT-EFEQEAIPNVDAVDESSSRTKGN-----------FSVDLKLG------------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRAR--AANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQIPCPDRNLFAQYQGPSYYLSPF 850
            M+W+LK     +W+   E E      V A   SSS   G             SVDLKLG            +V  + E +  K     A+   + + S   KR R  AA    Q  SC VDGC  DLS CRDYHR HKVCE HSKTP V++ G++ RFCQQCSRFH L+EFDE +R+CRKRL+GHN+++      P    +  A  QG  +  SPF
Sbjct:    1 MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGGLGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMNSASYLASQQGARF--SPF 214          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 8.256e-32
Identity = 93/226 (41.15%), Postives = 118/226 (52.21%), Query Frame = 2
Query:  293 MDWNLK-PAWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLG-----------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTA--SCLVDGCDSDLSNC-RDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQIPCPDRNLFAQYQGPSYYLSPFH*YPPARGGNP-----PGWSCKTEA 910
            MDW+ K P+WD           V           G  ++DLKLG              S+A  ++     P AS   S + +G  KRARA   G Q A  +C V+GC +DLS C RDYHR HKVCE HSKT  V + GQ+QRFCQQCSRFH L EFDE +R+CRKRL+GHN+++      P    NLFA + G + + S    +  A   +P     P    KTEA
Sbjct:    1 MDWDAKMPSWDLGTV-------VGPSGGGGGGGGGGGALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAG--KRARAGQ-GQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLNPGNLFANHHGAARFTSYPQIFSTAASMSPQETKWPANVVKTEA 216          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.457e-28
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 2
Query:  512 KRARAANNGSQ-----TASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQIPCPDRNLFAQYQGPSYYLSP 847
            +RAR  + G         +C VDGC SDLS CRDYHR HKVCE H+KTP V++ GQ+QRFCQQCSRFH L EFD+G+++CRKRL+GHN+++          R+    +Q   + + P
Sbjct:   74 RRARGGSGGGGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHDALNPRSFLPYHQANQFSVYP 190          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL14_ARATH (Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 3.589e-27
Identity = 69/168 (41.07%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  296 DWNLKPAWDFTEFEQEAIPNVDAVDESSSRTKGNFS-----VDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQ 784
            +WN K  WD+     EA P VD   +    T  N S     +DL LG   ++ E++         +  ++  P+   K+ R+ + G     C VD C  DLS+ +DYHR HKVCE+HSK  + L+  Q QRFCQQCSRFH L EFDEG+R+CR+RL GHN+++   +Q
Sbjct:   42 EWNSK-MWDWDSRRFEAKP-VDVEVQEFDLTLRNRSGEERGLDLNLGSGLTAVEET--------TTTTQNVRPN---KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 196          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL6_ARATH (Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.970e-25
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 2
Query:  512 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            K++RA+N  SQ   C V GC  DLS+ +DYH+ H+VCE HSKT  V++ G +QRFCQQCSRFH L EFD+G+R+CR+RL GHN+++
Sbjct:  110 KKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERR 195          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL2_ARATH (Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.360e-25
Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  320 DFTEFEQEAIPNVDA--VDESSSRT----KGNFSVDLKLGQVNSSAED--SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            +FT    E++P   A  +D S S       G+  + LKLG+  +  ED   +   K  G     + S     K++++     QT  C V+GC+ DLS+ +DYHR H++CE HSK P+V++ G ++RFCQQCSRFHCL EFDE +R+CR+RL  HN ++
Sbjct:   84 NFTSETGESLPGEFAKGIDTSPSLELSFGSGDPVLGLKLGK-RTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARR 240          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL10_ARATH (Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.484e-25
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  410 LKLGQVNSSAEDSLNKCKEPGASKMESPSPSG-SFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            LKLG+   S E       +  A  M   +PS  + K+ ++     Q   C +DGC+ DLS+ +DYHR H+VCE HSK P+V++ G ++RFCQQCSRFH + EFDE +R+CRKRL  HN ++
Sbjct:  127 LKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARR 247          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSJ (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.178e-24
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  404 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ +R+CR+RL  HN ++
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARR 253          
The following BLAST results are available for this feature:
BLAST of DY259989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL13_ARATH6.307e-4043.70Squamosa promoter-binding-like protein 13 OS=Arabi... [more]
SPL18_ORYSJ1.777e-3445.16Squamosa promoter-binding-like protein 18 OS=Oryza... [more]
SPL16_ORYSJ1.965e-3341.20Squamosa promoter-binding-like protein 16 OS=Oryza... [more]
SPL2_ORYSJ8.256e-3241.15Squamosa promoter-binding-like protein 2 OS=Oryza ... [more]
SPL19_ORYSJ1.457e-2849.57Putative squamosa promoter-binding-like protein 19... [more]
SPL14_ARATH3.589e-2741.07Squamosa promoter-binding-like protein 14 OS=Arabi... [more]
SPL6_ARATH1.970e-2558.14Squamosa promoter-binding-like protein 6 OS=Arabid... [more]
SPL2_ARATH3.360e-2540.51Squamosa promoter-binding-like protein 2 OS=Arabid... [more]
SPL10_ARATH7.484e-2545.45Squamosa promoter-binding-like protein 10 OS=Arabi... [more]
SPL3_ORYSJ2.178e-2444.80Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259989 ID=DY259989; Name=DY259989; organism=Citrus clementina; type=EST; length=946bp
CACTTCTTCTCTTTCTCCAACCATCTTCTTAGCCTTTCTACATTCAAGTT
TATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTATCTTTG
AGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATGTCAGTG
AATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCTGTCTTG
AAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGGAGGGAA
TTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTATGGACTG
GAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAGCTATTC
CTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGGAATTTC
TCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGATTCGTT
GAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTTCACCTT
CAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAGACTGCG
TCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAGGGATTA
CCATAGGCCGCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTCAGGTTT
TGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGATTTCAT
TGCCTGGAGGAGTTTGATGAAGGGGAGAGAAACTGCAGGAAACGTCTTGA
AGGGCACAACCAAAAACAAGGAAACCTCAGCCAGATCCCCTGTCCCGACC
GGAACCTTTTTGCCCAATACCAAGGGCCCTCTTATTACCTTTCCCCGTTC
CATTAGTACCCGCCCGCACGGGGGGGAAACCCCCCGGGCTGGAGTTGTAA
AACGGAAGCAAAAGCAGGGGGTAAAAGAGGCTCCACCGTTAAATTG
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