DY259992

Overview
NameDY259992
Unique NameDY259992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.923e-63
Identity = 130/202 (64.36%), Postives = 145/202 (71.78%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQLDL*ACPQAQGASWTHFCWE-EVQRSPRKGVTLHHKARPSRRATLEEEPDSSL 636
            MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD AHNA+RNDP  +++    P  +         E +  R  R     +HK RPSRRAT ++    SL
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDP--RINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSISL 200          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.923e-63
Identity = 130/202 (64.36%), Postives = 145/202 (71.78%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQLDL*ACPQAQGASWTHFCWE-EVQRSPRKGVTLHHKARPSRRATLEEEPDSSL 636
            MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD AHNA+RNDP  +++    P  +         E +  R  R     +HK RPSRRAT ++    SL
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDP--RINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSLSL 200          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.947e-62
Identity = 134/215 (62.33%), Postives = 143/215 (66.51%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQLDL*ACPQAQGASWTHFCWEEVQRSPRKGVT--------------LHHKARPSRRATLEEEPDSSL 636
            MGAY YVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGL+VLNSYWINEDSTYKYFEVILVD AH AIRNDP+              +W   C    +    +G+T              LH+KA PSRRA  +     SL
Sbjct:    1 MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQAHAAIRNDPR-------------INW--ICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRNQTLSL 200          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.109e-60
Identity = 122/201 (60.70%), Postives = 140/201 (69.65%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQLDL*ACPQAQGASWTHFCWEEVQRSPRKGVTLHHKARPSRRATLEEEPDSSL 636
            MGAYKY+ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+EV+LVD AH  IRNDP+      A  + +         ++ +    +G  L+HKARPS+RAT +     SL
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRG-HLYHKARPSKRATWKRNNTLSL 200          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 6.926e-60
Identity = 122/201 (60.70%), Postives = 142/201 (70.65%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQLDL*ACPQAQGASWTHFCWEEVQRSPRKGVTLHHKARPSRRATLEEEPDSSL 636
            MGAYKY+ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+E+ILVD AH+AIR DP+      A  + +         ++ +    +G  L+HKARPS+RAT +     SL
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRG-HLYHKARPSKRATWKRNNTLSL 200          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_ICTPU (60S ribosomal protein L15 OS=Ictalurus punctatus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.607e-58
Identity = 94/149 (63.09%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQ 149          

HSP 2 Score: 55.4546 bits (132), Expect = 3.607e-58
Identity = 29/53 (54.72%), Postives = 31/53 (58.49%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG             PW+R  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAPWRRRNT 197          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_MYLPI (60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 1.042e-57
Identity = 94/149 (63.09%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQ 149          

HSP 2 Score: 53.5286 bits (127), Expect = 1.042e-57
Identity = 29/53 (54.72%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRDT 197          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_CTEID (60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 1.042e-57
Identity = 94/149 (63.09%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQ 149          

HSP 2 Score: 53.5286 bits (127), Expect = 1.042e-57
Identity = 29/53 (54.72%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_CYPCA (60S ribosomal protein L15 OS=Cyprinus carpio GN=rpl15 PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 3.012e-57
Identity = 92/149 (61.74%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VL+SYW+ EDSTYK+FEV+L+D  H AIR DP  Q
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLIDTFHKAIRRDPDTQ 149          

HSP 2 Score: 53.5286 bits (127), Expect = 3.012e-57
Identity = 29/53 (54.72%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_HYPNO (60S ribosomal protein L15 OS=Hypophthalmichthys nobilis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 3.926e-57
Identity = 93/149 (62.42%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQ 149          

HSP 2 Score: 53.5286 bits (127), Expect = 3.926e-57
Identity = 29/53 (54.72%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197          
The following BLAST results are available for this feature:
BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL152_ARATH3.923e-6364.3660S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH3.923e-6364.3660S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15_PETHY1.947e-6262.3360S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL15B_PICMA3.109e-6060.7060S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA6.926e-6060.7060S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15_ICTPU3.607e-5863.0960S ribosomal protein L15 OS=Ictalurus punctatus G... [more]
RL15_MYLPI1.042e-5763.0960S ribosomal protein L15 OS=Mylopharyngodon piceu... [more]
RL15_CTEID1.042e-5763.0960S ribosomal protein L15 OS=Ctenopharyngodon idel... [more]
RL15_CYPCA3.012e-5761.7460S ribosomal protein L15 OS=Cyprinus carpio GN=rp... [more]
RL15_HYPNO3.926e-5762.4260S ribosomal protein L15 OS=Hypophthalmichthys no... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA
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