DY259994

Overview
NameDY259994
Unique NameDY259994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1100
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259994 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.337e-17
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  160 ESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXID-SQIDIKFQRNVDKATICSLDLDEAKVKQF 429
            E +H YQ  E V LW+N VGPY+N QETY Y+SLPFC  S      +            ++ S +DIKF+ +V  AT C +DLD+ K   F
Sbjct:   30 EHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAF 120          

HSP 2 Score: 33.113 bits (74), Expect = 3.337e-17
Identity = 10/20 (50.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  437 AIENNYWFEFFLDDLPFMGL 496
            AI+N+YW++ ++DDLP  G+
Sbjct:  123 AIKNHYWYQMYIDDLPIWGI 142          
BLAST of DY259994 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.527e-17
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  160 ESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXID-SQIDIKFQRNVDKATICSLDLDEAKVKQF 429
            E +H YQ  E V LW+N VGPY+N QETY Y+SLPFC  S      +            ++ S +DIKF+ +V   T C +DLD+ K   F
Sbjct:   28 EHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAF 118          

HSP 2 Score: 33.113 bits (74), Expect = 9.527e-17
Identity = 10/20 (50.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  437 AIENNYWFEFFLDDLPFMGL 496
            AI+N+YW++ ++DDLP  G+
Sbjct:  121 AIKNHYWYQMYIDDLPIWGI 140          
BLAST of DY259994 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.115e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  175 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKATICSLDLDEAKVKQFQR 435
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q ++
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQ 121          
BLAST of DY259994 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.068e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  175 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKATICSLDLDEAKVKQFQR 435
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q ++
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQ 121          
BLAST of DY259994 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.068e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  175 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKATICSLDLDEAKVKQFQR 435
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q ++
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQ 121          
BLAST of DY259994 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.068e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  175 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKATICSLDLDEAKVKQFQR 435
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q ++
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQ 121          
BLAST of DY259994 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.068e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  175 YQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXXIDSQIDIKFQRNVDKATICSLDLDEAKVKQFQR 435
            Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK              +S  +I+F+ NV+K  +C + L  A+V+Q ++
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQ 121          
The following BLAST results are available for this feature:
BLAST of DY259994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM9S3_HUMAN3.337e-1742.86Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S3_MOUSE9.527e-1741.76Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S1_BOVIN3.115e-1240.23Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S1_RAT4.068e-1240.23Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB4.068e-1240.23Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE4.068e-1240.23Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN4.068e-1240.23Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YN24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259994 ID=DY259994; Name=DY259994; organism=Citrus clementina; type=EST; length=1100bp
GTTGAGGGGAGTCTTCCAGAGGCTGTTTACAGACACCTTGATCTTGAAAT
CAGGACCGTCCGATTTCACTCGCTGGTCGATCGCATCGTCATGTCCTCCG
CCGCTCGATCTCTCTCCCTTTTCCTCCTCCTGCTCTTCGTCTCCCCTTCT
CTAGCCTCCGAGTCAGATCACAAGTATCAACAAGATGAACCTGTTACCCT
ATGGGTAAATAAGGTTGGCCCGTATAACAATCCACAAGAAACTTACAACT
ATTACAGTCTTCCATTTTGCCATGCATCTGGCAATCCTGCGCACAAATGG
GGCGGTCTTGGTGAGGTCCTGGGTGGAAATGAACTTATTGACAGTCAAAT
AGACATAAAGTTCCAAAGGAATGTGGACAAAGCCACCATCTGTTCATTGG
ATCTTGATGAGGCAAAGGTCAAACAATTCCAAAGATGCAATTGAGAACAA
TTATTGGTTTGAATTCTTCTTGGATGATCTGCCCTTTATGGGGCTTTGTT
GGTGATCCTGCCTCCTGATAAGAACCGTGATAACCGGAAGCTCGTCCCTC
CACACACACCACTATATACATTCCAAATCCAATAACACATCCAACCTTTC
ATTGCTAACCCCCTTCAAGACAGCCCCAAGCCCTCTGGATTCTGCCACCC
CTTCCTCCAGACCACTTCACCTCCACCCCCCCCACTTCCTACCTTCTTCC
CCTCTTATTTTTTATCTTCTAATCCTCCCCTACACCAAACACCCAGAACC
ATCAGCCCCCTCAACTTCACATCTCTCATCGCCTGTCACCTTCCTACTCC
TTCTTGCCCTCCGTCCCCTCACTTCACACTAACATTCATCCAACATTCAC
CTCTTCCATCCCGTATTCAACTCCCAAACATCACCCATCGAAACACAACA
CCTGCCCACCCTCACCCACATCCCTTAACTCATCACCATCCCTACTCACA
CCCCCCCACCTCATTTGATGTTTACTTTATCCTGGTCTAATCACCACAAC
TTTTACACCCACTCAATCATTATATACCCTAACACTCCTCTCTCCTCCAC
ACACAAAGCGCCCATTCATAACTCTCCTCAACTACATCCTACCCTCCCCA
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