DY260001

Overview
NameDY260001
Unique NameDY260001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1018
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260001_ssr897 microsatellite DY260001_ssr897:897..911. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11526 contig Ccv1_Contig11526:527..1544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.319e-30
Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = -3
Query:    3 GGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVHHTIDNS-------KRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 413
            GG   +       +PL IIDR VT+M +ISPSN+ VD+G +TLKP EYI M+RREVLD++LR RA   GA +L+ L   +D+P   +P APY++H+T  +S       KRTL VD ++GADGA+SRVAKSI AG Y  AI  QE
Sbjct:   92 GGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG-QTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMP--KAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAKSINAGDYEYAIAFQE 232          
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = -3
Query:    3 GGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVHHT-------IDNSKRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 413
            GG   +       +PL IIDR VT+M +ISPSN+ VD+G +TLK  EYI M+RREVLD++LR RA+  GA +++ L   +D P +    +PY +H+T          +K+T+ VD ++GADGA+SRVAKSI AG Y  AI  QE
Sbjct:   95 GGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIG-RTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWD--SPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRVAKSIDAGDYDYAIAFQE 235          
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.717e-25
Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = -3
Query:    3 GGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVHHTIDNS--------KRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 413
            GG   +       +PL ++DR V +M +ISPSN+ VD+G  TL P EYI M+RREVLD++LRSRA+  GA +++ L    + P    P   Y+VH+   +S        KRT  VD IVGADGA+SRVAK + AG Y  AI  QE
Sbjct:   90 GGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGG-TLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAP--KEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAKDMGAGDYEYAIAFQE 231          
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.340e-25
Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = -3
Query:    3 ELLVEESVPCDAEGVRGGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVH---HTIDNS---KRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 461
            E  ++ + PC      GG   +       +P  IIDR V +M +ISPSN+ V++G +TLK DEYI M RREVLD FLR RA+  G  +++  V  +D+PS  S   PY +H   H++  +    + L VDV++GADGA+SR+AK+I AG Y  AI  QE
Sbjct:   32 ERKLDNAKPC------GGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIG-QTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSD--PYTLHYADHSVGGTTGEMKILKVDVVIGADGANSRIAKAIDAGDYNYAIAFQE 181          
The following BLAST results are available for this feature:
BLAST of DY260001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLP_TOBAC1.319e-3052.08Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH1.509e-2647.22Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ3.717e-2546.21Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY36.340e-2543.40Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YO13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260001 ID=DY260001; Name=DY260001; organism=Citrus clementina; type=EST; length=1018bp
CTCTCCTGGACTTTGATGGCGCACGTGTAACCTCCGGCTTTTATGGATTT
GGCCACGCGGCTGTGCGCCCCGTCGGCGCCGACTATGACGTCGACGGCCA
GAGTGCGCTTGGAGTTGTCGATCGTGTGGTGTACGATGTAGGGAGCGGTG
GGGGAGGAAGAAGACGGGAGGTCGACGGCCGTGACGAGAGCGTGGAGGAG
GTGGGCGCCGCGTGACTGGGCGCGCGAGCGGAGGAAGGAATCCAGCACTT
CGCGGCGGAGCATGGGGATGTACTCGTCGGGTTTGAGAGTCTTTGCGCCC
AAATCAACGGTGAGGTTAGAGGGGGAGATGATACTCATCCTGGTGACGTG
GCGGTCGATGATGTGGAGGGGGACCTGGCATCTGATGGTGCATGTTATCA
GGCAAGGGCCCCCCCGCACGCCTTCGGCGTCACAAGGGACGCTTTCCTCG
ACTAATAGTTCTCACGCTCTGACGCCGTCCAGATCATTCTTCCTCGATAA
CGAACAGAGGGATCCTCGCCTCACTTACGCCGAAGTGGGCCTTTCCTCCC
TCCCTAACACCCCACCCCTCGTCCTCCCAAACCCCCCCCACAACCGATCT
CTGACACTCCTTCGATGCACTGCGCCCCCTCCCCCCTTCTGGCATCTGTT
CCATTCTGACACTAAACCTTCCAACCCCCAATTTAGAAGCCCCCCCTAGG
CAACACGTGCTATCCCGCTCCTTACCAACCTACCCCAACTCCTTCCCCCG
CCCAACTACTTACCACTGCGGCCATCCCGCACCAAGTTACCCAGGTTCCT
AGAGAGTATACGCACACCTCCTACTCTTGCGCTTCGCAACTGTTTAACAC
ACTCTCCCTCTCGCCCCATACCCCCATGCACCTTCGCCCGTCCCTCTCCC
TTCCCTTCCCTGGCTCGCTTCCGCGCCCTCTCGTTCCGCCACTCCCCACC
CTCTCCCACCCAAACTCCTTCTCGCTGGTAACCACTCTCTTACCACACAA
AACCCTTTTTTATTCTTC
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