DY260001
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.319e-30 Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = -3 Query: 3 GGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVHHTIDNS-------KRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 413 GG + +PL IIDR VT+M +ISPSN+ VD+G +TLKP EYI M+RREVLD++LR RA GA +L+ L +D+P +P APY++H+T +S KRTL VD ++GADGA+SRVAKSI AG Y AI QE Sbjct: 92 GGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG-QTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMP--KAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAKSINAGDYEYAIAFQE 232
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26 Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = -3 Query: 3 GGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVHHT-------IDNSKRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 413 GG + +PL IIDR VT+M +ISPSN+ VD+G +TLK EYI M+RREVLD++LR RA+ GA +++ L +D P + +PY +H+T +K+T+ VD ++GADGA+SRVAKSI AG Y AI QE Sbjct: 95 GGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIG-RTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWD--SPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRVAKSIDAGDYDYAIAFQE 235
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.717e-25 Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = -3 Query: 3 GGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVHHTIDNS--------KRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 413 GG + +PL ++DR V +M +ISPSN+ VD+G TL P EYI M+RREVLD++LRSRA+ GA +++ L + P P Y+VH+ +S KRT VD IVGADGA+SRVAK + AG Y AI QE Sbjct: 90 GGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGG-TLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAP--KEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAKDMGAGDYEYAIAFQE 231
BLAST of DY260001 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 6.340e-25 Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = -3 Query: 3 ELLVEESVPCDAEGVRGGPCLITCTIRCQVPLHIIDRHVTRMSIISPSNLTVDLGAKTLKPDEYIPMLRREVLDSFLRSRAQSRGAHLLHALVTAVDLPSSSSPTAPYIVH---HTIDNS---KRTLAVDVIVGADGAHSRVAKSIKAGGYTCAIKVQE 461 E ++ + PC GG + +P IIDR V +M +ISPSN+ V++G +TLK DEYI M RREVLD FLR RA+ G +++ V +D+PS S PY +H H++ + + L VDV++GADGA+SR+AK+I AG Y AI QE Sbjct: 32 ERKLDNAKPC------GGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIG-QTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSD--PYTLHYADHSVGGTTGEMKILKVDVVIGADGANSRIAKAIDAGDYNYAIAFQE 181 The following BLAST results are available for this feature:
BLAST of DY260001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260001 ID=DY260001; Name=DY260001; organism=Citrus clementina; type=EST; length=1018bpback to top |