DY260145

Overview
NameDY260145
Unique NameDY260145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1036
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260145_ssr24 microsatellite DY260145_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260145_ssr41 microsatellite DY260145_ssr41:41..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 5.666e-45
Identity = 107/210 (50.95%), Postives = 141/210 (67.14%), Query Frame = 3
Query:  111 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRN---TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNPSATIPTDMDTVDPPFTLDPFAGNPGWVGYEDLLYLASTN 731
            N+ V+D   NM  +SQ YP DV T   IV   GE  +PKRR++K      + +GG    +KRKLT EQ  +LEM FG+EHKLES+RKD+LAAELGLDPRQVAVWFQNRRAR K K++EE Y  LK +H+NVVV+K RLESEV  LKE+L  AE+EI++++E +EG S ++P ++    ++  + PF  D   G+ G   Y+ L Y    N
Sbjct:    2 NYTVDDQ--NMAFISQLYP-DVYTQ--IVQPVGEVKQPKRRRKKTKGSVASADGGNGLFRKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSSNSPISS-SVSVEANETPFFGDYKVGDDG-DDYDHLFYPVPEN 204          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.000e-41
Identity = 102/212 (48.11%), Postives = 142/212 (66.98%), Query Frame = 3
Query:  111 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTN----------GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNPSATIPTDMDTVDPPFTLDPFAGNPGWVGYEDLLY 716
            N  V+D+  N++L+SQ YP+ V TP  +VPQQG  +KP RR+++++ +          GNG FR   KRKL+ EQ  +LE+ F ++HKLES+RKD+LA+ELGLDPRQVAVWFQNRRAR K K++E+ Y  LK A+E  VVEK RL+SEV  LKE+L  AE+EI+++++ +EG   ++P ++  T       PF  D   G  G    E+LLY
Sbjct:    3 NQNVDDH--NLLLISQLYPN-VYTP--LVPQQGGEAKPTRRRKRKSKSVVVAEEGENEGNGWFR---KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKRVEGTLSNSPISSSVTIEANHTTPFFGDYDIGFDGEAD-ENLLY 205          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.724e-39
Identity = 96/213 (45.07%), Postives = 127/213 (59.62%), Query Frame = 3
Query:  141 MVLLSQFYPSDVLTPTG--IVPQQ---GEPSKPKRRQRKRNTNGNGGFRA---------LKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNPSATIPTDMDTVDPPFTLDPFAGNPGWVGYEDLLYLASTNYL 737
            M+L SQ YP          I+  Q   GE SKP +R+RKR + G+              L+KRKLT EQ  +LE  FGNEHKLES RK+K+A ELGLDPRQVAVWFQNRRAR K KK+EE YA LK  H+NVV+ + +LES++  L E+LS A+ EI+K+SE +E +  ++ S+++  + +     F L P         Y    Y+   NYL
Sbjct:   11 MMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSSSLSVEANNAPTDFELAP------ETNYNIPFYMLDNNYL 217          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.710e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  126 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM 578
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRL 161          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.710e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  126 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM 578
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRL 161          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.891e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  207 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 581
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.891e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  207 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 581
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.830e-20
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKL 548
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  Y  LK+        ++++V++  +L SEV +L EKL
Sbjct:   68 KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL 164          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.131e-19
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNPSATIPTDMDTVDPP 656
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   +KE                SATI T    VD P
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQ--DKETSP------------SSATITTAAQEVDQP 204          
BLAST of DY260145 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.131e-19
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  279 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLHNPSATIPTDMDTVDPP 656
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   +KE                SATI T    VD P
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQ--DKETSP------------SSATITTAAQEVDQP 204          
The following BLAST results are available for this feature:
BLAST of DY260145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATB40_ARATH5.666e-4550.95Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB21_ARATH1.000e-4148.11Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB53_ARATH2.724e-3945.07Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]
HOX14_ORYSJ9.710e-2944.30Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSI9.710e-2944.30Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX12_ORYSJ5.891e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI5.891e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HAT5_ARATH4.830e-2053.61Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX5_ORYSJ3.131e-1945.11Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI3.131e-1945.11Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260145 ID=DY260145; Name=DY260145; organism=Citrus clementina; type=EST; length=1036bp
CACATTACCAATTTATCATATCCATATATATATATATATTCACACACACA
CACACACACACACATATTTGAGAGAGATTTATGATCAGAGAAATGATCGT
AACAAACACGAATCATCAAGTTGAAGATAACAAAAGTAATATGGTCTTGC
TTTCCCAGTTTTACCCTTCTGATGTTCTCACACCAACTGGAATCGTTCCA
CAACAAGGGGAGCCGTCTAAGCCGAAGCGCAGGCAACGCAAACGGAATAC
TAACGGAAACGGTGGCTTTCGTGCTTTGAAGAAGAGAAAGCTGACGGCTG
AACAAGCTGAGCTTCTTGAGATGCATTTTGGCAACGAACACAAGCTTGAA
TCTGACAGAAAAGACAAGCTCGCTGCTGAGCTCGGACTCGACCCTCGTCA
AGTGGCCGTGTGGTTTCAGAACCGGAGGGCTCGTGATAAGACTAAGAAGA
TTGAGGAGACCTACGCTACCTTGAAGACCGCTCATGAAAATGTCGTCGTG
GAGAAAACCCGACTCGAGTCTGAGGTGGCAACGCTGAAAGAGAAGCTTTC
CGTTGCCGAGAAGGAGATTAAGAAAATGTCAGAGCTCATTGAAGGGATTT
CACTCCATAATCCGAGTGCCACGATCCCCACGGACATGGACACCGTGGAC
CCCCCGTTTACCCTGGACCCTTTTGCTGGTAATCCTGGGTGGGTTGGATA
TGAGGACCTCCTCTACCTGGCTTCCACAAATTACCTTTTCCGCCGCCGAG
TGGCCCCTACCCCCCCCCCTATTAATCCCCCCAGTGGCCCCCCACCTCCT
TTGATTTAGGATGGGGGGCTGGAAAAAAAATGACCCACCAAATGGATCCA
GCCTGGGTTTCCATGGGGGGGCCTGCCTGGCCCCAAATTGGGGCCAACCC
CCTAACCCAAAAAAACATGCCCGGGGGGTTGGGACCCCGGCAAACAACCC
CGGGCGGTCGCCGGGTGAAGGGATGTGGGGGCTGGGACAGAAACATACAC
ATTCTTTTTTTTCCCAAATTTTTACTTTTTTTTTTT
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