DY262446

Overview
NameDY262446
Unique NameDY262446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262446_ssr540 microsatellite DY262446_ssr540:540..551. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262446_ssr652 microsatellite DY262446_ssr652:652..677. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262446_ssr384 microsatellite DY262446_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262446_ssr396 microsatellite DY262446_ssr396:396..411. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262446 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.693e-21
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 3
Query:   36 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLVVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDW 365
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDW 99          
The following BLAST results are available for this feature:
BLAST of DY262446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.693e-2150.00Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AA05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262446 ID=DY262446; Name=DY262446; organism=Citrus clementina; type=EST; length=1301bp
ATTTAGAAACTAGCAGCTAAATTTTAAATTTAAAGATGCTAGAGAAGCTT
TGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCT
GAGGAAAATCACCACAACACCCTTAGTAGTCAAAGAGGGTGGTGAGGCGG
AGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCA
GGGGCACCGTCGACGCCAGTGACGCCGACGACTCCGCTGTCGGCGCGTAA
GGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTA
GGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCC
ACTGTTTATGACTGGTAAGTACGTGCGTGTGTCCTCACTCACTCACTCGC
TCGCTCGCTCGCTCTTCACTTGCATAGATGCTGCATGCATGTTCTAACTT
ATTATTCTTTCTTTAGACTTTTATCAGTTGAACGCAAAGGCAACTTGTAC
TATATCTATATATGTTTAATCATGTTCGGTTGCTGATAAATATATATATA
TTTTTTAATTTGTTCTCTGTTTCTCTCCCTTTTTTTTTTTTAATAACTGA
ATTAGTTCCCCGATCGGAAAAAAAACCGCAGCTTATTATATTCATGTGTG
CGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAAAAAGAAAAATGATGAAAC
CAAATCAATGGAGCAACAACTCAAACATCTCTGTTTTTGTTTTGTCGTTC
TTACTGGCTTCTCTCAGCAACCAAATAAAGGCTAAGAGGAAGGAGGAAAA
CGTGGCACTCTGTCTCATGGGCGCGTTGAAATAGATCTTGTCTTATTCAG
TAATGATCACTCAATTCACACTCTTTTGTGAATCCCTGCAAGTTCTTCCT
TAGTTAAAGCCAAATGATGATGTATTAGATAATATATTTTGTATTATGTA
GTGATCATGGATAAAGATTAGATCGTACTCTAGCTAGGGGCTGTTGGATC
TGTTACTTTGCGGTAGATGATTAAAGTGGTAATTTACCAAACTGATTGAT
AAACCTTTTTTTTTTAATTATAATTATAATATTAATATTAATAAAATGGA
TTCGAATTCCCCCGGGTATCGGGGGCGTCTTTGTTTTTGGTACCGGGGAA
GTTTTTGATGTTTTTTTTTTAATATGGGTTTTTTTTGGATTTGGCAGGGG
TTTTACGAGGGGGGGGGAGAAAAAAGAGAAAACACAACCCCCCTTTCCCC
TGCGAAAGGGGAGAGAAAAAAAACCCCCTCTTCCCCCGGCGCGGAGGTAT
A
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