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Overview
Name | DY262446 |
Unique Name | DY262446 |
Type | EST |
Organism | Citrus clementina (Clementine) |
Sequence length | 1301 |
Libraries
Library Name | Type |
CitNFL | cdna_library |
Analyses
This EST is derived from or has results from the following analyses
Alignments
Feature Name | Type | Location | Analysis |
DY262446_ssr540 |
microsatellite |
DY262446_ssr540:540..551. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
DY262446_ssr652 |
microsatellite |
DY262446_ssr652:652..677. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
DY262446_ssr384 |
microsatellite |
DY262446_ssr384:384..395. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
DY262446_ssr396 |
microsatellite |
DY262446_ssr396:396..411. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
Homology
BLAST of DY262446 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.693e-21 Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 3
Query: 36 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLVVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDW 365
+L+KLWDD+VAGPQP+RGLG LRK+ PL +K+ GE+ S RKDNVWRSVFHPGSNL+++ +G +VFD P PNSPTVYDW
Sbjct: 3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDW 99
The following BLAST results are available for this feature:
Properties
Property Name | Value |
Genbank description | IC0AAA100AA05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence. |
Sequences
The
following sequences are available for this feature:
EST sequence >DY262446 ID=DY262446; Name=DY262446; organism=Citrus clementina; type=EST; length=1301bp ATTTAGAAACTAGCAGCTAAATTTTAAATTTAAAGATGCTAGAGAAGCTT TGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCT GAGGAAAATCACCACAACACCCTTAGTAGTCAAAGAGGGTGGTGAGGCGG AGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCA GGGGCACCGTCGACGCCAGTGACGCCGACGACTCCGCTGTCGGCGCGTAA GGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTA GGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCC ACTGTTTATGACTGGTAAGTACGTGCGTGTGTCCTCACTCACTCACTCGC TCGCTCGCTCGCTCTTCACTTGCATAGATGCTGCATGCATGTTCTAACTT ATTATTCTTTCTTTAGACTTTTATCAGTTGAACGCAAAGGCAACTTGTAC TATATCTATATATGTTTAATCATGTTCGGTTGCTGATAAATATATATATA TTTTTTAATTTGTTCTCTGTTTCTCTCCCTTTTTTTTTTTTAATAACTGA ATTAGTTCCCCGATCGGAAAAAAAACCGCAGCTTATTATATTCATGTGTG CGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAAAAAGAAAAATGATGAAAC CAAATCAATGGAGCAACAACTCAAACATCTCTGTTTTTGTTTTGTCGTTC TTACTGGCTTCTCTCAGCAACCAAATAAAGGCTAAGAGGAAGGAGGAAAA CGTGGCACTCTGTCTCATGGGCGCGTTGAAATAGATCTTGTCTTATTCAG TAATGATCACTCAATTCACACTCTTTTGTGAATCCCTGCAAGTTCTTCCT TAGTTAAAGCCAAATGATGATGTATTAGATAATATATTTTGTATTATGTA GTGATCATGGATAAAGATTAGATCGTACTCTAGCTAGGGGCTGTTGGATC TGTTACTTTGCGGTAGATGATTAAAGTGGTAATTTACCAAACTGATTGAT AAACCTTTTTTTTTTAATTATAATTATAATATTAATATTAATAAAATGGA TTCGAATTCCCCCGGGTATCGGGGGCGTCTTTGTTTTTGGTACCGGGGAA GTTTTTGATGTTTTTTTTTTAATATGGGTTTTTTTTGGATTTGGCAGGGG TTTTACGAGGGGGGGGGAGAAAAAAGAGAAAACACAACCCCCCTTTCCCC TGCGAAAGGGGAGAGAAAAAAAACCCCCTCTTCCCCCGGCGCGGAGGTAT A back to top
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