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Overview
| Analysis Name | Citrus limon L. Burm f. genome v1.0 - Alternative |
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| Method | Oxford Nanopore, Illumina (Assembly with Falcon, Polca) |
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| Source | Edmund Mach Foundation & University of Catania |
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| Date performed | 2021-12-07 |
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CGD Accession: CGD21001
Citation: Di Guardo M, Moretto M, Moser M, Catalano C, Troggio M, Deng Z, Cestaro A, Caruso M, Distefano G, La Malfa S, Bianco L, Gentile A. The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.). Tree Genetics & Genomes. 2021 Nov 09; 17:46.
Cultivar: Femminello Siracusano
Alternative Assembly Metrics
| Number of scaffolds |
799 |
| Total bases |
324,746,294 |
| N50 |
30,652,384 |
| Predicted transcripts |
34,577 |
| Annotated genes |
32,415 |
| Assembly BUSCO score (embryophtya_odb10) |
94.8% |
| Annotation BUSCO score (embryophtya_odb10) |
69.9% |
Downloads
Below are links to data files related to this genome assembly. These files can also be accessed and downloaded from the CGD data repository. This page has links to the files that are most commonly downloaded.
Genome Assembly, C. limon v1.0, alternative:
Homology Analysis Results:
The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab. Results were parsed into an Excel format.
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