CGD Citations

Peer-reviewed papers citing CGD

2024 (10)

1. Kaur, H., Manchanda, P., Sidhu, G. S., & Chhuneja, P. (2024). Genome-wide identification and characterization of flowering genes in Citrus sinensis (L.) Osbeck: a comparison among C. Medica L., C. Reticulata Blanco, C. Grandis (L.) Osbeck and C. Clementina. BMC Genomic Data, 25(1), 20
   Cited By
2. Lin, X., Shi, Y., Liu, S., Liu, X., Zhang, M., Zhang, B., ... & Chen, K. (2024). Genome-wide identification of the histone acetyltransferase gene family in Citrus clementina and its potential roles in citrate metabolism. Food Quality and Safety, 8, fyad052.
3. Li, X., Mao, G., Chen, W., Wu, P., Zhang, R., Zhang, M., ... & Zeng, J. (2024). Integrated untargeted metabolomic and transcriptomic analyses reveal OMT genes controlling polymethoxyflavonoid biosynthesis in the pericarp of Citrus reticulata ‘Chachi’. Scientia Horticulturae, 327, 112808.
4. Hiraoka, Y., Ferrante, S. P., Wu, G. A., Federici, C. T., & Roose, M. L. (2024). Development and Assessment of SNP Genotyping Arrays for Citrus and Its Close Relatives. Plants, 13(5), 691.
5. Hashemipetroudi, S., Ghorbani, H., Sohrevardi, F., & Arab, M. (2024). Identification and comprehensive analyses of the CBL gene families in sweet orange (Citrus sinensisL.). Journal of Plant Molecular Breeding, 10(2), 76-91.
6. Zhang, J., Sun, L., Wang, Y., Li, B., Li, X., Ye, Z., & Zhang, J. (2024). A calcium-dependent protein kinase regulates the defense response in Citrus sinensis. Molecular Plant-Microbe Interactions, (ja).
7. Ali, M., Shafiq, M., Haider, M. Z., Sami, A., Alam, P., Albalawi, T., ... & Sabir, I. A. (2024). Genome-wide analysis of NPR1-like genes in citrus species and expression analysis in response to citrus canker (Xanthomonas axonopodis pv. citri). Frontiers in Plant Science, 15, 1333286.
8. Gaikwad, P. N., Singh, J., & Sidhu, G. S. (2024). Identification and diversity analysis of interspecific citrus rootstock hybrids with combination of morphological traits and microsatellite markers. Horticulture, Environment, and Biotechnology, 1-27.
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9. Park, H. L., Bhoo, S. H., Lee, S. W., & Cho, M. H. (2024). Biochemical characterization of a regiospecific flavonoid 3'-O-methyltransferase from orange. Applied Biological Chemistry, 67(1), 4. 
10. Shao, J., Zhao, Y., Wei, W., & Vaisman, I. I. (2024). AGRAMP: machine learning models for predicting antimicrobial peptides against phytopathogenic bacteria. Frontiers in Microbiology, 15, 1304044 

2023 (19)

11. la Rosa, F. R., González-Cruz, C., Adame-García, J., Chan-León, A. C., Santillán-Mendoza, R., Santamaría, J. M., & Estrella-Maldonado, H. (2023). Transcriptome-wide Identification of CDR Family in Citrus Latifolia and its Expression During HLB Disease. Tropical Plant Biology, 1-9.
12. da Silva, M. C., Pinto, P. I., Guerra, R., Duarte, A., Power, D. M., & Marques, N. T. (2023). Gene transcripts responsive to drought stress identified in Citrus macrophylla bark tissue transcriptome have a modified response in plants infected by Citrus tristeza virus. Scientia Horticulturae, 307, 111526.
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13. Jeong, H., Yun, Y. B., Jeong, S. Y., Cho, Y., & Kim, S. (2023). Characterization of miniature inverted repeat transposable elements inserted in the CitRWP gene controlling nucellar embryony and development of molecular markers for reliable genotyping of CitRWP in Citrus species. Scientia Horticulturae, 315, 112003.
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14. Nakandala, U., Masouleh, A. K., Smith, M. W., Furtado, A., Mason, P., Constantin, L., & Henry, R. J. (2023). Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes. Horticulture Research, 10(5), uhad058.
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15. Maheen, N., Shafiq, M., Sadiq, S., Farooq, M., Ali, Q., Habib, U., ... & Ali, F. (2023). Genome Identification and Characterization of WRKY Transcription Factor Gene Family in Mandarin (Citrus reticulata). Agriculture, 13(6), 1182.
16. Gao, Y., Xu, J., Li, Z., Zhang, Y., Riera, N., Xiong, Z., ... & Wang, N. (2023). Citrus genomic resources unravel putative genetic determinants of Huanglongbing pathogenicity. Iscience, 26(2).
17. Kubo, T., Matsumoto, Y., Yamashita, T., Watanabe, S., & Kotoda, N. (2023). QTL mapping of flavanone glycoside accumulation in citrus. Tree Genetics & Genomes, 19(2), 18.
18. Wang, X., Li, Y., Lu, W., Zhang, M., Deng, H., Xiong, B., ... & Wang, Z. (2023). A citrus pulp mastication trait-related ABSCISIC ACID-INSENSITIVE 5-like protein promotes fruit softening via transcriptionally activating pectate lyase gene. Scientia Horticulturae, 314, 111933.
19. Gong, J., Yang, H., Xu, Y., Zeng, Y., Liu, P., Chen, C., ... & Sun, X. (2023). Differential regulation of red light-and ethephon-induced degreening in postharvest kumquat fruit. Postharvest Biology and Technology, 198, 112264.
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20. Singh, J., Sharma, A., Sharma, V., Gaikwad, P. N., Sidhu, G. S., Kaur, G., ... & Rattanpal, H. S. (2023). Comprehensive genome-wide identification and transferability of chromosome-specific highly variable microsatellite markers from citrus species. Scientific Reports, 13(1), 10919.
21. Sadiq, S., Hussain, M., Iqbal, S., Shafiq, M., Balal, R. M., Seleiman, M. F., ... & Shahid, M. A. (2023). Genome-Wide Identification and Characterization of the Biosynthesis of the Polyamine Gene Family in Citrus unshiu. Genes, 14(8), 1527.
22. Volk, G. M., Gmitter Jr, F. G., & Krueger, R. R. (2023). Conserving Citrus Diversity: From Vavilov’s Early Explorations to Genebanks around the World. Plants, 12(4), 814.
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23. Misiewicz, T. M., Simmons, T., Carter, B. E., Fine, P. V., & Moore, A. J. (2023). Parallel evolution and cryptic diversification in a common and widespread Amazonian tree, Protium subserratum. Molecular Ecology, 32(9), 2301-2319.
24. Liao, Z., Liu, X., Zheng, J., Zhao, C., Wang, D., Xu, Y., & Sun, C. (2023). A multifunctional true caffeoyl coenzyme AO-methyltransferase enzyme participates in the biosynthesis of polymethoxylated flavones in citrus. Plant Physiology, kiad249.
25. Aguila, L. C. R., Moreano, J. P. S., Akutse, K. S., Bamisile, B. S., Liu, J., Haider, F. U., ... & Wang, L. (2023). Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana. International Journal of Biological Macromolecules, 225, 886-898.
26. Testolin, R., Messina, R., Cipriani, G., & De Mori, G. (2023). SSR‐based DNA fingerprinting of fruit crops. Crop Science, 63(2), 390-459.
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27. Fang, H., Shi, Y., Liu, S., Jin, R., Sun, J., Grierson, D., ... & Chen, K. (2023). The transcription factor CitZAT5 modifies sugar accumulation and hexose proportion in citrus fruit. Plant Physiology, 192(3), 1858-1876.
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28. Makam, S., Sétamou, M., Alabi, O. J., Day, W., Cromey, D., & Nwugo, C. (2023). Mitigation of Huanglongbing: Implications of a biologically-enhanced nutritional program on yield, pathogen localization and host gene expression profiles. Plant Disease, (ja).
    Cited By
29. Yadav, C. B., Rozen, A., Eshed, R., Ish-Shalom, M., Faigenboim, A., Dillon, N., ... & Sherman, A. (2023). Promoter insertion leads to polyembryony in mango—a case of convergent evolution with citrus. Horticulture Research, 10(12), uhad227.

2022 (23)

30. Kim, H. B., Oh, C. J., Kim, N. H., Choi, C. W., Kim, M., Park, S., ... & Song, K. J. (2022). Genome-wide identification and expression profiling of the pectin methylesterase gene family in Citrus sinensis (L.) Osbeck. Journal of Plant Biotechnology, 49(4), 271-291.
    Cited By
31. Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. (2022). Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stress. Plant, Cell & Environment, 45(1), 95-104.
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32. Matsumoto, Y., Kubo, T., Itami, Y., Islam, M., Watanabe, S., & Kotoda, N. (2022). QTL mapping of polymethoxyflavone (PMF) accumulation in citrus. Tree Genetics & Genomes, 18(1), 1-13.
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33. Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2022). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruit. Plant Science, 316, 111150.
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34. Zhang, H., Li, X. Y., Lin, M. L., Hu, P. P., Lai, N. W., Huang, Z. R., & Chen, L. S. (2022). The aluminum distribution and translocation in two citrus species differing in aluminum tolerance. BMC Plant Biology, 22(1), 1-11.
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35. Shi, Q. F., Long, J. M., Yin, Z. P., Jiang, N., Feng, M. Q., Zheng, B., ... & Wu, X. M. (2022). miR171 modulates induction of somatic embryogenesis in citrus callus. Plant Cell Reports, 1-13.
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36. Bordoloi, K. S., Baruah, P. M., Das, M., & Agarwala, N. (2022). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon. Food Bioscience, 46, 101448.
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37. Gill, K., Kumar, P., Kumar, A., Kapoor, B., Sharma, R., & Joshi, A. K. (2022). Comprehensive mechanistic insights into the citrus genetics, breeding challenges, biotechnological implications, and omics-based interventions. Tree Genetics & Genomes, 18(2), 1-26.
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38. Xin, Y. H., Wu, Y. X., Qiao, B., Su, L., Xie, S. Q., & Ling, P. (2022). Evaluation on the phenotypic diversity of Calamansi (Citrus microcarpa) germplasm in Hainan island. Scientific Reports, 12(1), 1-12.
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39. Carraro, E., & Di Iorio, A. (2022). Eligible strategies of drought response to improve drought resistance in woody crops: a mini-review. Plant Biotechnology Reports, 1-18.
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40. Hou, H., Kong, X., Zhou, Y., Yin, C., Jiang, Y., Qu, H., & Li, T. (2022). Genome-wide identification and characterization of bZIP transcription factors in relation to litchi (Litchi chinensis Sonn.) fruit ripening and postharvest storage. International Journal of Biological Macromolecules.
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41. Higgins, S. A., Mann, M., & Heck, M. (2022). Strain tracking of ‘Candidatus Liberibacter asiaticus’, citrus greening disease pathogen, enabled by high-resolution microbiome analysis of the Asian citrus psyllid. Phytopathology, (ja).
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42. Liu, S., Li, Y., Fang, H., Huang, B., Zhao, C., Sun, C., ... & Chen, K. (2022). Genome-wide identification and expression analysis of MATE gene family in citrus fruit (Citrus clementina). Genomics, 114(5), 110446.
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43. Chen, C., Peng, X., Wan, C., Zhang, Y., Gan, Z., Zeng, J., ... & Chen, J. (2022). Lignin Biosynthesis Pathway and Redox Balance Act Synergistically in Conferring Resistance against Penicillium italicum Infection in 7-Demethoxytylophorine-Treated Navel Orange. Journal of Agricultural and Food Chemistry, 70(26), 8111-8123.
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44. Hui, W., Zheng, H., Fan, J., Wang, J., Saba, T., Wang, K., ... & Gong, W. (2022). Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum. BMC genomics, 23(1), 1-21.
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45. Tian, Y., Zeng, J., & Fan, R. (2022). Comprehensive Analysis of N6-Methyladenosine Regulatory Genes from Citrus grandis and Expression Profilings in the Fruits of “Huajuhong”(C. grandis “Tomentosa”) during Various Development Stages. Horticulturae, 8(5), 462.
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46. Khalilzadeh, M., Weber, K. C., Dutt, M., El-Mohtar, C. A., & Levy, A. (2022). Comparative transcriptome analysis of Citrus macrophylla tree infected with Citrus tristeza virus stem pitting mutants provides new insight into the role of phloem regeneration in stem pitting disease. Frontiers in Plant Science, 13, 987831
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47. Hou, H., Kong, X., Zhou, Y., Yin, C., Jiang, Y., Qu, H., & Li, T. (2022). Genome-wide identification and characterization of bZIP transcription factors in relation to litchi (Litchi chinensis Sonn.) fruit ripening and postharvest storage. International Journal of Biological Macromolecules, 222, 2176-2189.
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48. Zeng, J., Chen, C., Chen, M., & Chen, J. (2022). Comparative transcriptomic and metabolomic analyses reveal the delaying effect of naringin on postharvest decay in citrus fruit. Frontiers in Plant Science, 13, 1045857.
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49. Wang, P., Mo, Y., Wang, Y., Fei, Y., Huang, J., Ni, J., & Xu, Z. F. (2022). Macadamia germplasm and genomic database (MacadamiaGGD): A comprehensive platform for germplasm innovation and functional genomics in Macadamia. Frontiers in plant science, 13, 1007266.
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50. Higgins, S. A., Mann, M., & Heck, M. (2022). Strain Tracking of ‘Candidatus Liberibacter asiaticus’, the Citrus Greening Pathogen, by High-Resolution Microbiome Analysis of Asian Citrus Psyllids. Phytopathology®, 112(11), 2273-2287.
    Cited By
51. Liu, S., Liu, X., Gou, B., Wang, D., Liu, C., Sun, J., ... & Chen, K. (2022). The interaction between CitMYB52 and CitbHLH2 negatively regulates citrate accumulation by activating CitALMT in citrus fruit. Frontiers in Plant Science, 13, 848869.
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52. Grimplet, J. (2022). Genomic and Bioinformatic Resources for Perennial Fruit Species. Current Genomics, 23(4), 217.

2021 (51)

53. Hu, X., Li, S., Lin, X., Fang, H., Shi, Y., Grierson, D., & Chen, K. (2021). Transcription Factor CitERF16 Is Involved in Citrus Fruit Sucrose Accumulation by Activating CitSWEET11d. Frontiers in plant science, 12, 809619-809619.
    Cited By
54. Catalano, C., Di Guardo, M., Distefano, G., Caruso, M., Nicolosi, E., Deng, Z., ... & La Malfa, S. G. (2021). Biotechnological Approaches for Genetic Improvement of Lemon (Citrus limon (L.) Burm. f.) against Mal Secco Disease. Plants, 10(5), 1002.
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55. Montgomery, K. H., Brar, G., & Krishnan, V. V. (2021). Metabolomics Study at the Postharvest Conditions of Cold Storage and Fungicide (Imazalil Sulfate) Treatment in Navel Oranges and Clementine Mandarins. ACS Agricultural Science & Technology.
    Cited By
56. Ma, G., Zhang, L., Seoka, M., Nakata, A., Yahata, M., Shimada, T., ... & Kato, M. (2021). Characterization of a Caffeic Acid 8-O-Methyltransferase from Citrus and Its Function in Nobiletin Biosynthesis. Journal of agricultural and food chemistry. 
    Cited By
57. Guardo, M. D., Moretto, M., Moser, M., Catalano, C., Troggio, M., Deng, Z., ... & Gentile, A. (2021). The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.). Tree Genetics & Genomes, 17(6), 1-12.
    Cited By
58. Tian, Y., Fan, R., & Zeng, J. (2021). Comprehensive Analysis of Jumonji Domain C Family from Citrus grandis and Expression Profilings in the Exocarps of “Huajuhong”(Citrus grandis “Tomentosa”) during Various Development Stages. Horticulturae, 7(12), 592.
    Cited By
59. Flores-de la Rosa, F. R., Estudillo, E. V., Santillán-Mendoza, R., Rodriguez-Quibrera, C. G., & Adame-García, J. (2021). EFFECT OF THE GABA APPLICATION ON THE EXPRESSION OF ANTIOXIDANT GENES IN PERSIAN LIME. Tropical and Subtropical Agroecosystems, 24(3).
60. Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings in bioinformatics, 22(6), bbab238.
    Cited By
61. Rahim, M. A., Afrin, K. S., Jung, H. J., Kim, H. T., Park, J. I., & Nou, I. S. (2021). Identification and characterization of carotenoid biosynthesis related genes in a novel dark skinned citrus mutant cultivar ‘Suneat’. Horticulture, Environment, and Biotechnology, 62(1), 99-111.
62. Teper, D., & Wang, N. (2021). Consequences of adaptation of TAL effectors on host susceptibility to Xanthomonas. PLoS genetics, 17(1), e1009310.
    Cited By
63. Huang, C. Y., Araujo, K., Sánchez, J. N., Kund, G., Trumble, J., Roper, C., ... & Jin, H. (2021). A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. Proceedings of the National Academy of Sciences, 118(6).
    Cited By
64. Duan, J., Li, X., Zhang, J., Cheng, B., Liu, S., Li, H., ... & Chen, W. (2021). Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus Huanglongbing. Frontiers in Plant Science, 12, 479.
    Cited By
65. Peng, A., Zou, X., He, Y., Chen, S., Liu, X., Zhang, J., ... & Zhao, X. (2021). Overexpressing a NPR1-like gene from Citrus paradisi enhanced Huanglongbing resistance in C. sinensis. Plant Cell Reports, 40(3), 529-541.
    Cited By
66. Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to Thermotherapy. Horticultural Plant Journal, 7(1), 1-12.
    Cited By
67. Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breeding. Database, 2021.
    Cited By
68. Ramanauskas, K., & Igić, B. (2021). RNase-based self-incompatibility in cacti. New Phytologist, 231(5), 2039-2049.
    Cited By
69. Li, Q., Canton, M., Wu, H., Zhang, X., Zale, J., & Mou, Z. (2021). Efficient artificial microRNA vectors for gene silencing in citrus. Plant Cell Reports, 1-4.
70. Zhao, C., Liu, X., Gong, Q., Cao, J., Shen, W., Yin, X., ... & Sun, C. (2021). Three AP2/ERF family members modulate flavonoid synthesis by regulating type IV chalcone isomerase in citrus. Plant biotechnology journal, 19(4), 671.
    Cited By
71. Liu, X. C., Lin, X. H., Liu, S. C., Zhu, C. Q., Grierson, D., Li, S. J., & Chen, K. S. (2021). The effect of NH4+ on phosphoenolpyruvate carboxykinase gene expression, metabolic flux and citrate content of citrus juice sacs. Plant Physiology and Biochemistry, 167, 123-131.
    Cited By
72. Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database, 2021.
    Cited By
73. Ren, H., He, Y., Qi, X., Zheng, X., Zhang, S., Yu, Z., & Hu, F. (2021). The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value. BMC Plant Biology, 21(1), 1-11.
    Cited By
74. Wang, F., Wu, Y., Wu, W., Huang, Y., Zhu, C., Zhang, R., ... & Zeng, J. (2021). Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection. BMC plant biology, 21(1), 1-16.
    Cited By
75. Merritt, B. A., Zhang, X., Triplett, E. W., Mou, Z., & Orbović, V. (2021). Selection of transgenic citrus plants based on glyphosate tolerance conferred by a citrus 5-enolpyruvylshikimate-3-phosphate synthase variant. Plant Cell Reports, 40(10), 1947-1956.
    Cited By
76. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q. S., & Luo, C. (2021). Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and drought. Canadian Journal of Plant Science, (ja).
    Cited By
77. Al-Subhi, A. M., Al-Sadi, A. M., Al-Yahyai, R. A., Chen, Y., Mathers, T., Orlovskis, Z., ... & Hogenhout, S. A. (2021). Witches’ broom disease of lime contributes to phytoplasma epidemics and attracts insect vectors. Plant Disease, PDIS-10.
78. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2021). Genome-wide identification of citrus histone acetyltransferase and deacetylase families and their expression in response to arbuscular mycorrhizal fungi and drought. Journal of Plant Interactions, 16(1), 367-376.
    Cited By
79. Chin, E. L., Ramsey, J., Saha, S., Mishchuk, D., Chavez, J., Howe, K., ... & Slupsky, C. M. (2021). Multi-omics Comparison Reveals Landscape of Citrus limon and Citrus sinensis Response to ‘Candidatus Liberibacter asiaticus’. PhytoFrontiers™, 1(2), 76-84.
    Cited By
80. Wenkai, H., Jingyan, W., Lexun, M., Feiyan, Z., Luping, J., Yu, Z., ... & Wei, G. (2021). Identification of key genes in the biosynthesis pathways related to terpenoids, alkaloids and flavonoids in fruits of Zanthoxylum armatum. Scientia Horticulturae, 290, 110523.
    Cited By
81. Zhong, Y., Cheng, C., Moniruzzaman, M., Jiang, B., Jiang, N., & Zhong, G. (2021). Expression of miRNAs and their target genes in roots of ‘Sanhu’tangerine (Citrus reticulata blanco cv.‘Sanhu’) in response to Candidatus Liberibacter asiaticus infection. Journal of Plant Diseases and Protection, 128(2), 407-420.
    Cited By
82. García S, A., & Casamayor, J. C. (2021). On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome. BMC bioinformatics, 22(13), 1-26.
    Cited By
83. Ribeiro, C., Xu, J., Teper, D., Lee, D., & Wang, N. (2021). The transcriptome landscapes of citrus leaf in different developmental stages. Plant Molecular Biology, 1-18.
    Cited By
84. Gong, J., Zeng, Y., Meng, Q., Guan, Y., Li, C., Yang, H., ... & Wang, P. (2021). Red light-induced kumquat fruit coloration is attributable to increased carotenoid metabolism regulated by FcrNAC22. Journal of Experimental Botany, 72(18), 6274-6290.
    Cited By
85. Abutineh, M., Pizzo, N., Nifakos, N., Jin, X. L., Harlin, J. M., & Zhang, X. H. (2021). Genomic Analysis for Citrus Disease Detection. OBM Genetics, 5(1), 1-1.
    Cited By
86. Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breeding. Database, 2021, baab054.
    Cited By
87. Zhao, C., Liu, X., Gong, Q., Cao, J., Shen, W., Yin, X., ... & Sun, C. (2021). Three AP2/ERF family members modulate flavonoid synthesis by regulating type IV chalcone isomerase in citrus. Plant Biotechnology Journal, 19(4), 671-688.
    Cited By
88. Ma, G., Zhang, L., Seoka, M., Nakata, A., Yahata, M., Shimada, T., ... & Kato, M. (2021). Characterization of a caffeic acid 8-O-methyltransferase from citrus and its function in nobiletin biosynthesis. Journal of Agricultural and Food Chemistry, 70(2), 543-553
    Cited By
89. Merritt, B. A., Zhang, X., Triplett, E. W., Mou, Z., & Orbović, V. (2021). Selection of transgenic citrus plants based on glyphosate tolerance conferred by a citrus 5-enolpyruvylshikimate-3-phosphate synthase variant. Plant Cell Reports, 40, 1947-1956.
    Cited By
90. Rahim, M. A., Afrin, K. S., Jung, H. J., Kim, H. T., Park, J. I., & Nou, I. S. (2021). Identification and characterization of carotenoid biosynthesis related genes in a novel dark skinned citrus mutant cultivar ‘Suneat’. Horticulture, Environment, and Biotechnology, 62, 99-111.
    Cited By
91. Ribeiro, C., Xu, J., Teper, D., Lee, D., & Wang, N. (2021). The transcriptome landscapes of citrus leaf in different developmental stages. Plant Molecular Biology, 106, 349-366.
    Cited By
92. Chin, E. L., Ramsey, J., Saha, S., Mishchuk, D., Chavez, J., Howe, K., ... & Slupsky, C. M. (2021). Multi-omics comparison reveals landscape of Citrus limon and Citrus sinensis response to ‘Candidatus Liberibacter asiaticus’. PhytoFrontiers™, 1(2), 76-84.
    Cited By
93. Huang, C. Y., Araujo, K., Sánchez, J. N., Kund, G., Trumble, J., Roper, C., ... & Jin, H. (2021). A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. Proceedings of the National Academy of Sciences, 118(6), e2019628118
    Cited By
94. Duan, J., Li, X., Zhang, J., Cheng, B., Liu, S., Li, H., ... & Chen, W. (2021). Cocktail therapy of fosthiazate and cupric-ammoniun complex for citrus huanglongbing. Frontiers in Plant Science, 12, 643971.
    Cited By
95. Peng, A., Zou, X., He, Y., Chen, S., Liu, X., Zhang, J., ... & Zhao, X. (2021). Overexpressing a NPR1-like gene from Citrus paradisi enhanced Huanglongbing resistance in C. sinensis. Plant cell reports, 40, 529-541.
    Cited By
96. Hu, X., Li, S., Lin, X., Fang, H., Shi, Y., Grierson, D., & Chen, K. (2021). Transcription factor CitERF16 is involved in citrus fruit sucrose accumulation by activating CitSWEET11d. Frontiers in Plant Science, 12, 809619.
    Cited By
97. Al-Subhi, A. M., Al-Sadi, A. M., Al-Yahyai, R. A., Chen, Y., Mathers, T., Orlovskis, Z., ... & Hogenhout, S. A. (2021). Witches’ broom disease of lime contributes to phytoplasma epidemics and attracts insect vectors. Plant Disease, 105(9), 2637-2648.
    Cited By
98. Montgomery, K. H., Brar, G., & Krishnan, V. V. (2021). Metabolomics Study at the Postharvest Conditions of Cold Storage and Fungicide (Imazalil Sulfate) Treatment in Navel Oranges and Clementine Mandarins. ACS Agricultural Science & Technology, 2(1), 79-89.
    Cited By
99. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2021). Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and drought. Canadian Journal of Plant Science, 102(1), 112-123.
    Cited By
100. Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database, 2021, baab023.
     Cited By
101. Ramanauskas, K., & Igić, B. (2021). RNase‐based self‐incompatibility in cacti. New Phytologist, 231(5), 2039-2049.
     Cited By
102. Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings in Bioinformatics, 22(6), bbab238.
     Cited By
103. Li, Q., Canton, M., Wu, H., Zhang, X., Zale, J., & Mou, Z. (2021). Efficient artificial microRNA vectors for gene silencing in citrus. Plant Cell Reports, 40(12), 2449-2452.

2020 (23)

104. Zhang, C., Chaiprasongsuk, M., Chanderbali, A. S., Chen, X., Fu, J., Soltis, D. E., & Chen, F. (2020). Origin and evolution of a gibberellin‐deactivating enzyme GAMT. Plant direct, 4(12), e00287.
     Cited By
105. Arlotta, C., Ciacciulli, A., Strano, M. C., Cafaro, V., Salonia, F., Caruso, P., ... & Caruso, M. (2020). Disease Resistant Citrus Breeding Using Newly Developed High Resolution Melting and CAPS Protocols for Alternaria Brown Spot Marker Assisted Selection. Agronomy, 10(9), 1368.
     Cited By
106. Li, Q., Qi, J., Qin, X., Dou, W., Lei, T., Hu, A., ... & Xu, L. (2020). CitGVD: a comprehensive database of citrus genomic variations. Horticulture Research, 7(1), 1-8.
     Cited By
107. Shu, B., Jue, D., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2020). Genome-wide identification and expression analysis of the citrus calcium-dependent protein kinase (CDPK) genes in response to arbuscular mycorrhizal fungi colonization and drought. Biotechnology & Biotechnological Equipment, 34(1), 1304-1314.
     Cited By
108. Dasgupta, K., Hotton, S., Belknap, W., Syed, Y., Dardick, C., Thilmony, R., & Thomson, J. G. (2020). Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology. BMC biotechnology, 20(1), 1-15.
     Cited By
109. Luo, C., Sun, Q., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Shu, B. (2020). Genome-wide identification and expression analysis of the Citrus malectin domain-containing receptor-like kinases in response to arbuscular mycorrhizal fungi colonization and drought. Horticulture, Environment, and Biotechnology, 61(5), 891-901.
     Cited By
110. SHU, B., CAI, D., ZHANG, F., ZHANG, D., LIU, C., WU, Q., & LUO, C. (2020). Identifying citrus CBL and CIPK gene families and their expressions in response to drought and arbuscular mycorrhizal fungi colonization. Biologia plantarum, 64, 773-783.
     Cited By
111. Rathod, A. R., Shah, K. D., Kotak, J. N., Ghelani, M. K., & Talaviya, J. R. (2020). Population dynamics of leaf miner, Phyllocnistis citrella (Stainton) infesting sweet orange. Journal of Entomology and Zoology Studies, 8(3), 1519-1521.
     Cited By
112. Yin, C., Zhu, H., Jiang, Y., Shan, Y., & Gong, L. (2020). Silencing dicer-like genes reduces virulence and sRNA generation in Penicillium italicum, the cause of citrus blue mold. Cells, 9(2), 363.
     Cited By
113. Gómez, L. M., Teixeira-Silva, N. S., Caserta, R., Takita, M. A., Marques, M. O., & de Souza, A. A. (2020). Overexpression of Citrus reticulata SAMT in Nicotiana tabacum increases MeSA volatilization and decreases Xylella fastidiosa symptoms. Planta, 252(6), 1-14.
     Cited By
114. Zhang, F., Rossignol, P., Huang, T., Wang, Y., May, A., Dupont, C., ... & Irish, V. F. (2020). Reprogramming of stem cell activity to convert thorns into branches. Current Biology, 30(15), 2951-2961.
     Cited By
115. Asins, M. J., Raga, M. V., Roca, D., & Carbonell, E. A. (2020). QTL and candidate gene analyses of rootstock-mediated mandarin fruit yield and quality traits under contrasting iron availabilities. Tree Genetics & Genomes, 16(6), 1-15.
     Cited By
116. Huang, X., Wang, Y., Xu, J., & Wang, N. (2020). Development of multiplex genome editing toolkits for citrus with high efficacy in biallelic and homozygous mutations. Plant molecular biology, 104(3), 297-307.
     Cited By
117. Bhatta, B. P., & Malla, S. (2020). Improving Horticultural Crops via CRISPR/Cas9: Current Successes and Prospects. Plants, 9(10), 1360.
     Cited By
118. Duhan, N., Meshram, M., Loaiza, C. D., & Kaundal, R. (2020). citSATdb: Genome-Wide Simple Sequence Repeat (SSR) Marker Database of Citrus Species for Germplasm Characterization and Crop Improvement. Genes, 11(12), 1486.
     Cited By
119. Liu, X., Zhao, C., Gong, Q., Wang, Y., Cao, J., Li, X., ... & Sun, C. (2020). Characterization of a caffeoyl-CoA O-methyltransferase-like enzyme involved in biosynthesis of polymethoxylated flavones in Citrus reticulata. Journal of experimental botany, 71(10), 3066-3079.
     Cited By
120. Liu, X., Wang, Y., Chen, Y., Xu, S., Gong, Q., Zhao, C., ... & Sun, C. (2020). Characterization of a flavonoid 3’/5’/7-O-methyltransferase from Citrus reticulata and evaluation of the in vitro cytotoxicity of its methylated products. Molecules, 25(4), 858.
     Cited By
121. Meng, H., Feng, J., Bai, T., Jian, Z., Chen, Y., & Wu, G. (2020). Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrus. DNA Research, 27(1), dsaa004.
     Cited By
122. Julião, M. H., Silva, S. R., Ferro, J. A., & Varani, A. M. (2020). A Genomic and Transcriptomic Overview of MATE, ABC, and MFS Transporters in Citrus sinensis Interaction with Xanthomonas citri subsp. citri. Plants, 9(6), 794.
     Cited By
123. Ferrasa, A., Murata, M. M., Cofre, T. D., Cavallini, J. S., Peron, G., Julião, M. H., ... & Ferro, J. A. (2020). CitrusKB: a comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stages. Database, 2020, baaa081.
     Cited By
124. Buch, D. U., Sharma, O. A., Pable, A. A., & Barvkar, V. T. (2020). Characterization of microRNA genes from Pigeonpea (Cajanus cajan L.) and understanding their involvement in drought stress. Journal of Biotechnology, 321, 23-34.
     Cited By
125. Ren, Y., Hua, Q., Pan, J., Zhang, Z., Zhao, J., He, X., ... & Hu, G. (2020). SKP1-like protein, CrSKP1-e, interacts with pollen-specific F-box proteins and assembles into SCF-type E3 complex in ‘Wuzishatangju’(Citrus reticulata Blanco) pollen. PeerJ, 8, e10578.
     Cited By
126. Jamil, I. N., Remali, J., Azizan, K. A., Nor Muhammad, N. A., Arita, M., Goh, H. H., & Aizat, W. M. (2020). Systematic multi-omics integration (MOI) approach in plant systems biology. Frontiers in plant science, 11, 944.
     Cited By

2019 (16)

127.  Ferreira, M. D. G., Castro, J. A., Silva, R. J. S., & Micheli, F. (2019). HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stress. Plant Physiology and Biochemistry, 142, 395-404.
     Cited By
128. Li, S. J., Xie, X. L., Liu, S. C., Chen, K. S., & Yin, X. R. (2019). Auto-and mutual-regulation between two CitERFs contribute to ethylene-induced citrus fruit degreening. Food chemistry, 299, 125163.
     Cited By
129. Chagné, D., Vanderzande, S., Kirk, C., Profitt, N., Weskett, R., Gardiner, S. E., ... & Bassil, N. V. (2019). Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus× domestica Borkh.) using the OpenArray® platform. Horticulture research, 6(1), 1-16.
     Cited By
130. Ouyang, Z. G., Mi, L. F., Duan, H. H., Hu, W., Chen, J. M., Peng, T., & Zhong, B. L. (2019). Differential expressions of citrus CAMTAs during fruit development and responses to abiotic stresses. BIOLOGIA PLANTARUM, 63(1), 354-364.
131. Spoor, S., Cheng, C. H., Sanderson, L. A., Condon, B., Almsaeed, A., Chen, M., ... & Bett, K. (2019). Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. Database, 2019.
132. Hodgson, H., De La Peña, R., Stephenson, M. J., Thimmappa, R., Vincent, J. L., Sattely, E. S., & Osbourn, A. (2019). Identification of key enzymes responsible for protolimonoid biosynthesis in plants: Opening the door to azadirachtin production. Proceedings of the National Academy of Sciences, 116(34), 17096-17104.
     Cited by
133. Deng, H., Cai, Z., Xiang, S., Guo, Q., Huang, W., & Liang, G. (2019). Karyotype analysis of diploid and spontaneously occurring tetraploid blood orange (Citrus sinensis (L.) Osbeck) using multicolor FISH with repetitive DNA sequences as probes. Frontiers in Plant Science, 10, 331.
134. Miao, L., Chen, C., Yao, L., Tran, J., & Zhang, H. (2019). Genome-wide identification, characterization, interaction network and expression profile of GAPDH gene family in sweet orange (Citrus sinensis). PeerJ, 7, e7934.
     Cited By
135. Cao, M., Zhang, S., Li, M., Liu, Y., Dong, P., Li, S., ... & Zhou, Y. (2019). Discovery of Four Novel Viruses Associated with Flower Yellowing Disease of Green Sichuan Pepper (Zanthoxylum armatum) by Virome Analysis. Viruses, 11(8), 696.
     Cited By
136. Buble, K., Jung, S., Humann, J. L., Yu, J., Cheng, C. H., Lee, T., ... & Main, D. (2019). Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. Database, 2019.
     Cited By
137. Chen, F., Song, Y., Li, X., Chen, J., Mo, L., Zhang, X., ... & Zhang, L. (2019). Genome sequences of horticultural plants: past, present, and future. Horticulture research, 6.
     Cited By
138. Zheng, Y., Wu, S., Bai, Y., Sun, H., Jiao, C., Guo, S., ... & Fei, Z. (2019). Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. Nucleic acids research, 47(D1), D1128-D1136.
     Cited By
139. Deng, H., Xiang, S., Guo, Q., Jin, W., Cai, Z., & Liang, G. (2019). Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications. BMC plant biology, 19, 1-11.
     Cited By
140. Liu, Y., Tahir ul Qamar, M., Feng, J. W., Ding, Y., Wang, S., Wu, G., ... & Chen, L. L. (2019). Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species. BMC plant biology, 19(1), 1-16.
     Cited By
141. Deng, H., Cai, Z., Xiang, S., Guo, Q., Huang, W., & Liang, G. (2019). Karyotype analysis of diploid and spontaneously occurring tetraploid blood orange [Citrus sinensis (L.) Osbeck] using multicolor FISH with repetitive DNA sequences as probes. Frontiers in Plant Science, 10, 331.
     Cited By
142. De Ollas, C., Morillón, R., Fotopoulos, V., Puértolas, J., Ollitrault, P., Gómez-Cadenas, A., & Arbona, V. (2019). Facing climate change: biotechnology of iconic Mediterranean woody crops. Frontiers in Plant Science, 427.
     Cited By

2018 (8)

143. Long, J. M., Liu, C. Y., Feng, M. Q., Liu, Y., Wu, X. M., & Guo, W. W. (2018). miR156-SPL modules regulate induction of somatic embryogenesis in citrus callus. Journal of experimental botany, 69(12), 2979-2993.
     Cited By
144. Falk, T., Herndon, N., Grau, E., Buehler, S., Richter, P., Zaman, S., ... & Feltus, F. A. (2018). Growing and cultivating the forest genomics database, TreeGenes. Database, 2018.
     Cited By
145. Guo, Z. H., Shu, W. S., Cheng, H. Y., Wang, G. M., Qi, K. J., Zhang, S. L., & Gu, C. (2018). Expression analysis of TCP genes in peach reveals an involvement of PpTCP. A2 in ethylene biosynthesis during fruit ripening. Plant Molecular Biology Reporter, 36(4), 588-595.
     Cited By
146. Li, X., Si, W., Qin, Q., Wu, H., & Jiang, H. (2018). Deciphering evolutionary dynamics of SWEET genes in diverse plant lineages. Scientific reports, 8(1), 1-12.
     Cited By
147. Mahesh, H. B., Subba, P., Advani, J., Shirke, M. D., Loganathan, R. M., Chandana, S. L., ... & Gowda, M. (2018). Multi-omics driven assembly and annotation of the sandalwood (Santalum album) genome. Plant physiology, 176(4), 2772-2788.
     Cited By
148. Reiser, L., Harper, L., Freeling, M., Han, B., & Luan, S. (2018). FAIR: a call to make published data more findable, accessible, interoperable, and reusable. Molecular plant, 11(9), 1105-1108.
     Cited By
149. Gomez-Casati, D. F., Busi, M. V., Barchiesi, J., Peralta, D. A., Hedin, N., & Bhadauria, V. (2018). Applications of bioinformatics to plant biotechnology. Current issues in molecular biology, 27(1), 89-104.
     Cited By
150. Imai, A., Nonaka, K., Kuniga, T., Yoshioka, T., & Hayashi, T. (2018). Genome-wide association mapping of fruit-quality traits using genotyping-by-sequencing approach in citrus landraces, modern cultivars, and breeding lines in Japan. Tree genetics & genomes, 14, 1-15.
     Cited By

2017 (12)

151. Castro, J. A., Ferreira, M. D. G., Silva, R. J. S., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. PloS one, 12(5).
     Cited By
152. Jung, S., Lee, T., Cheng, C. H., Ficklin, S., Yu, J., Humann, J., & Main, D. (2017). Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. Database, 2017.
     Cited By
153. Chery, J. G., Sass, C., & Specht, C. D. (2017). Development of single‐copy nuclear intron markers for species‐level phylogenetics: Case study with Paullinieae (Sapindaceae) 1. Applications in plant sciences, 5(9), 1700051.
     Cited By
154. Rawat, N., Kumar, B., Albrecht, U., Du, D., Huang, M., Yu, Q., ... & Deng, Z. (2017). Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing-tolerant Poncirus trifoliata and its hybrids. Horticulture research, 4(1), 1-8.
     Cited By
155. Barichello, D., Farinacio, R., dos Santos, C. C. N., Andrade, G. A., Nagashima, G. T., Garbúglio, D. D., ... & Carlos, E. F. (2017). Drought-tolerant transgenic Swingle Citrumelo controls accumulation of proline modulating the expression of key genes of the proline metabolism. Citrus Research & Technology, 38(2), 1-12.
156. Roselli, S., Olry, A., Vautrin, S., Coriton, O., Ritchie, D., Galati, G., ... & Bourgaud, F. (2017). A bacterial artificial chromosome (BAC) genomic approach reveals partial clustering of the furanocoumarin pathway genes in parsnip. The Plant Journal, 89(6), 1119-1132.
     Cited By
157. da Silva, E. G., Ito, T. M., & de Souza, S. G. H. (2017). 'In silico'genome-wide identification and phylogenetic analysis of the WRKY transcription factor family in sweet orange ('Citrus sinensis'). Australian Journal of Crop Science, 11(6), 716.
     Cited By
158. Doud, M. M., Wang, Y., Hoffman, M. T., Latza, C. L., Luo, W., Armstrong, C. M., ... & Duan, Y. (2017). Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plants. Horticulture research, 4(1), 1-9.
     Cited By
159. Yu, Q., Chen, C., Du, D., Huang, M., Yao, J., Yu, F., ... & Gmitter, F. G. (2017). Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’. Horticulture research, 4(1), 1-15.
     Cited By
160. Yu, Y., Bai, J., Chen, C., Plotto, A., Yu, Q., Baldwin, E. A., & Gmitter, F. G. (2017). Identification of QTLs controlling aroma volatiles using a ‘Fortune’x ‘Murcott’(Citrus reticulata) population. BMC genomics, 18, 1-16.
     Cited By
161. Minamikawa, M. F., Nonaka, K., Kaminuma, E., Kajiya-Kanegae, H., Onogi, A., Goto, S., ... & Iwata, H. (2017). Genome-wide association study and genomic prediction in citrus: potential of genomics-assisted breeding for fruit quality traits. Scientific reports, 7(1), 4721
     Cited By
162. Lim, J., & Park, K. (2017). A fast algorithm for the all-pairs suffix–prefix problem. Theoretical Computer Science, 698, 14-24.
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2016 (24)

163. Yin, X. R., Xie, X. L., Xia, X. J., Yu, J. Q., Ferguson, I. B., Giovannoni, J. J., & Chen, K. S. (2016). Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. The Plant Journal, 86(5), 403-412.
     Cited By
164. Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database, 2016.
     Cited By
165. Wang, Y., Zhou, L., Yu, X., Stover, E., Luo, F., & Duan, Y. (2016). Transcriptome profiling of Huanglongbing (HLB) tolerant and susceptible citrus plants reveals the role of basal resistance in HLB tolerance. Frontiers in plant science, 7, 933.
     Cited By
166. Nwugo, C. C., Doud, M. S., Duan, Y. P., & Lin, H. (2016). Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants. BMC plant biology, 16(1), 253.
     Cited By
167. Shimizu, T., Kitajima, A., Nonaka, K., Yoshioka, T., Ohta, S., Goto, S., ... & Kaminuma, E. (2016). Hybrid origins of citrus varieties inferred from DNA marker analysis of nuclear and organelle genomes. PloS one, 11(11).
     Cited By
168. Fujii, H., Ohta, S., Nonaka, K., Katayose, Y., Matsumoto, T., Endo, T., ... & Shimada, T. (2016). Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markers. Breeding science, 16060.
     Cited By
169. Reyes, C. A., De Francesco, A., Ocolotobiche, E. E., Costa, N., & García, M. L. (2016). Uncontrolled Citrus psorosis virus infection in Citrus sinensis transgenic plants expressing a viral 24K-derived hairpin that does not trigger RNA silencing. Physiological and Molecular Plant Pathology, 94, 149-155.
     Cited By
170. Terol, J., Tadeo, F., Ventimilla, D., & Talon, M. (2016). An RNA‐Seq‐based reference transcriptome for Citrus. Plant biotechnology journal, 14(3), 938-950.
     Cited By
171. Ramos-González, P. L., Chabi-Jesus, C., Guerra-Peraza, O., Breton, M. C., Arena, G. D., Nunes, M. A., ... & Freitas-Astúa, J. (2016). Phylogenetic and molecular variability studies reveal a new genetic clade of Citrus leprosis virus C. Viruses, 8(6), 153.
     Cited By
172. Reyes, C. A., Ocolotobiche, E. E., Marmisollé, F. E., Robles Luna, G., Borniego, M. B., Bazzini, A. A., ... & García, M. L. (2016). Citrus psorosis virus 24 K protein interacts with citrus miRNA precursors, affects their processing and subsequent miRNA accumulation and target expression. Molecular plant pathology, 17(3), 317-329.
     Cited By
173. Ayadi, M., Hanana, M., Kharrat, N., Merchaoui, H., Marzoug, R. B., Lauvergeat, V., ... & Mzid, R. (2016). The WRKY transcription factor family in Citrus: Valuable and useful candidate genes for citrus breeding. Applied biochemistry and biotechnology, 180(3), 516-543.
     Cited By
174. Yu, Y., Chen, C., & Gmitter, F. G. (2016). QTL mapping of mandarin (Citrus reticulata) fruit characters using high-throughput SNP markers. Tree genetics & genomes, 12(4), 77.
     Cited By
175. Raga, V., Intrigliolo, D. S., Bernet, G. P., Carbonell, E. A., & Asins, M. J. (2016). Genetic analysis of salt tolerance in a progeny derived from the citrus rootstocks Cleopatra mandarin and trifoliate orange. Tree genetics & genomes, 12(3), 34.
     Cited By
176. Li, S. J., Yin, X. R., Xie, X. L., Allan, A. C., Ge, H., Shen, S. L., & Chen, K. S. (2016). The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Scientific reports, 6, 20151.
     Cited By
177. Wu, J., Chen, L., Lin, D., Ma, Z., & Deng, X. (2016). Development and Application of a Multiplex Real-Time PCR Assay as an Indicator of Potential Allergenicity in Citrus Fruits. Journal of agricultural and food chemistry, 64(47), 9089-9098.
     Cited By
178. Devaiah, S. P., Owens, D. K., Sibhatu, M. B., Sarkar, T. R., Strong, C. L., Mallampalli, V. K., ... & Wamucho, A. (2016). Identification, recombinant expression, and biochemical analysis of putative secondary product glucosyltransferases from Citrus paradisi. Journal of agricultural and food chemistry, 64(9), 1957-1969.
     Cited By
179. Iwata, H., Minamikawa, M. F., Kajiya-Kanegae, H., Ishimori, M., & Hayashi, T. (2016). Genomics-assisted breeding in fruit trees. Breeding Science, 66(1), 100-115.
     Cited By
180. Shiratake, K., & Suzuki, M. (2016). Omics studies of citrus, grape and rosaceae fruit trees. Breeding Science, 66(1), 122-138.
     Cited By
181. Nwugo, C. C., Doud, M. S., Duan, Y. P., & Lin, H. (2016). Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants. BMC Plant Biology, 16(1), 1-15.
     Cited By
182. Fujii, H., Ohta, S., Nonaka, K., Katayose, Y., Matsumoto, T., Endo, T., ... & Shimada, T. (2016). Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markers. Breeding science, 66(5), 683-691.
     Cited By
183. McIntosh, C. A., & Owens, D. K. (2016). Advances in flavonoid glycosyltransferase research: integrating recent findings with long-term citrus studies. Phytochemistry Reviews, 15, 1075-1091.
     Cited By
184. Li, H., Yang, L. T., Qi, Y. P., Guo, P., Lu, Y. B., & Chen, L. S. (2016). Aluminum toxicity-induced alterations of leaf proteome in two citrus species differing in aluminum tolerance. International Journal of Molecular Sciences, 17(7), 1180.
     Cited By
185. Lange, B. M. (2016). Online resources for gene discovery and biochemical research with aromatic and medicinal plants. Phytochemistry Reviews, 15, 489-510.
     Cited By
186. Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database, 2016, baw010.
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2015 (11)

187. Li, S. J., Liu, X. J., Xie, X. L., Grierson, D., Yin, X. R., & Chen, K. S. (2015). CrMYB73, a PH-like gene, contributes to citric acid accumulation in citrus fruit. Scientia Horticulturae, 197, 212-217.
     Cited By
188. Xu, M., Li, Y., Zheng, Z., Dai, Z., Tao, Y., & Deng, X. (2015). Transcriptional analyses of mandarins seriously infected by ‘Candidatus Liberibacter asiaticus’. PLoS One, 10(7).
     Cited By
189. Lin, Q., Jiang, Q., Lin, J., Wang, D., Li, S., Liu, C., ... & Chen, K. (2015). Heat shock transcription factors expression during fruit development and under hot air stress in Ponkan (Citrus reticulata Blanco cv. Ponkan) fruit. Gene, 559(2), 129-136.
     Cited By
190. Lin, Q., Wang, C., Dong, W., Jiang, Q., Wang, D., Li, S., ... & Chen, K. (2015). Transcriptome and metabolome analyses of sugar and organic acid metabolism in Ponkan (Citrus reticulata) fruit during fruit maturation. Gene, 554(1), 64-74.
     Cited By
191. Ito, T. M., Rampim, M. C., Vieira, C. E., Polido, P. B., Kaschuk, G., & de Souza, S. G. H. (2015). Modulation of the transcriptional activity of the AP2/ERF family (DREB genes) in orange (Citrus sinensis) leaves subjected to drought stress. African Journal of Biotechnology, 14(11), 901-909.
192. Terol, J., Ibañez, V., Carbonell, J., Alonso, R., Estornell, L. H., Licciardello, C., ... & Talon, M. (2015). Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation. BMC genomics, 16(1), 69.
     Cited By
193. Lin, Q., Li, S., Dong, W., Feng, C., Yin, X., Xu, C., ... & Chen, K. (2015). Involvement of CitCHX and CitDIC in developmental-related and postharvest-hot-air driven citrate degradation in citrus fruits. PloS one, 10(3).
     Cited By
194. Asins, M. J., Raga, V., Bernet, G. P., & Carbonell, E. A. (2015). Genetic analysis of reproductive, vegetative and fruit quality traits to improve Citrus varieties. Tree genetics & genomes, 11(6), 117.
     Cited By
195. Wang, Y., Zhou, L., Li, D., Dai, L., Lawton-Rauh, A., Srimani, P. K., ... & Luo, F. (2015). Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genes. PloS one, 10(3).
     Cited By
196. Roy, A., Stone, A. L., Shao, J., Otero-Colina, G., Wei, G., Choudhary, N., ... & Schneider, W. L. (2015). Identification and molecular characterization of nuclear Citrus leprosis virus, a member of the proposed Dichorhavirus genus infecting multiple Citrus species in Mexico. Phytopathology, 105(4), 564-575.
     Cited By
197. da Costa Silva, S., Mendes, S., dos Santos Soares Filho, W., & Pedrosa-Harand, A. (2015). Chromosome homologies between Citrus and Poncirus—the comparative cytogenetic map of mandarin (Citrus reticulata). Tree genetics & genomes, 11(1), 811.
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2014 (10)

198. Chagné, D., Crowhurst, R. N., Pindo, M., Thrimawithana, A., Deng, C., Ireland, H., ... & Bianco, L. (2014). The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’). PloS one, 9(4).
     Cited By
199. Xie, X. L., Shen, S. L., Yin, X. R., Xu, Q., Grierson, D., Ferguson, I., & Chen, K. S. (2014). Isolation, classification and transcription profiles of the AP2/ERF transcription factor superfamily in citrus. Molecular biology reports, 41(7), 4261-4271.
     Cited By
200. Azim, M. K., Khan, I. A., & Zhang, Y. (2014). Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genome. Plant molecular biology, 85(1-2), 193-208.
     Cited By
201. Caruso, M., Distefano, G., Paolo, D. P., La Malfa, S., Russo, G., Gentile, A., & Recupero, G. R. (2014). High resolution melting analysis for early identification of citrus hybrids: A reliable tool to overcome the limitations of morphological markers and assist rootstock breeding. Scientia horticulturae, 180, 199-206.
     Cited By
202. Ito, T. M., Polido, P. B., Rampim, M. C., Kaschuk, G., & Souza, S. G. (2014). Genome-wide identification and phylogenetic analysis of the AP2/ERF gene superfamily in sweet orange (Citrus sinensis). Genet Mol Res, 13(3), 7839-7851.
     Cited By
203. Pinheiro, T. T., Figueira, A., & Latado, R. R. (2014). Early-flowering sweet orange mutant ‘x11’as a model for functional genomic studies of Citrus. BMC research notes, 7(1), 511.
     Cited By
204. Tecle, I. Y., Edwards, J. D., Menda, N., Egesi, C., Rabbi, I. Y., Kulakow, P., ... & Mueller, L. A. (2014). solGS: a web-based tool for genomic selection. BMC bioinformatics, 15(1), 398.
     Cited By
205. Pereira, A. L., Carazzolle, M. F., Abe, V. Y., de Oliveira, M. L., Domingues, M. N., Silva, J. C., ... & Benedetti, C. E. (2014). Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response. BMC genomics, 15(1), 157.
     Cited By
206. Licciardello, C., D’Agostino, N., Traini, A., Recupero, G. R., Frusciante, L., & Chiusano, M. L. (2014). Characterization of the glutathione S-transferase gene family through ESTs and expression analyses within common and pigmented cultivars of Citrus sinensis (L.) Osbeck. BMC plant biology, 14(1), 39.
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207. Wisniewski, M., Nassuth, A., Teulieres, C., Marque, C., Rowland, J., Cao, P. B., & Brown, A. (2014). Genomics of cold hardiness in woody plants. Critical reviews in plant sciences, 33(2-3), 92-124.
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2013 (16)

208. An, C., Orbovic, V., & Mou, Z. (2013). An efficient intragenic vector for generating intragenic and cisgenic plants in citrus. American Journal of Plant Sciences, 4(11), 2131.
     Cited By
209. Bernardi, J., Mazza, R., Caruso, P., Recupero, G. R., Marocco, A., & Licciardello, C. (2013). Use of an expressed sequence tag-based method for single nucleotide polymorphism identification and discrimination of Citrus species and cultivars. Molecular breeding, 31(3), 705-718.
     Cited By
210. Peng, G., Xie, X. L., Jiang, Q., Song, S., & Xu, C. J. (2013). Chlorophyll a/b binding protein plays a key role in natural and ethylene-induced degreening of Ponkan (Citrus reticulata Blanco). Scientia Horticulturae, 160, 37-43.
     Cited By
211. Mercati, F., Riccardi, P., Leebens-Mack, J., Abenavoli, M. R., Falavigna, A., & Sunseri, F. (2013). Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.). Plant science, 203, 115-123.
     Cited By
212. Ma, G., Zhang, L., Matsuta, A., Matsutani, K., Yamawaki, K., Yahata, M., ... & Kato, M. (2013). Enzymatic formation of β-citraurin from β-cryptoxanthin and zeaxanthin by carotenoid cleavage dioxygenase4 in the flavedo of citrus fruit. Plant Physiology, 163(2), 682-695.
     Cited By
213. Shangguan, L., Han, J., Kayesh, E., Sun, X., Zhang, C., Pervaiz, T., ... & Fang, J. (2013). Evaluation of genome sequencing quality in selected plant species using expressed sequence tags. PLoS One, 8(7).
     Cited By
214. Iorio, R. A., Del Duca, S., Calamelli, E., Pula, C., Lodolini, M., Scamardella, F., ... & Ricci, G. (2013). Citrus allergy from pollen to clinical symptoms. PLoS One, 8(1).
     Cited By
215. Peng, G., Wang, C., Song, S., Fu, X., Azam, M., Grierson, D., & Xu, C. (2013). The role of 1-deoxy-d-xylulose-5-phosphate synthase and phytoene synthase gene family in citrus carotenoid accumulation. Plant Physiology and Biochemistry, 71, 67-76.
     Cited By
216. Roy, A., Shao, J., Hartung, J. S., Schneider, W., & Brlansky, R. H. (2013). A case study on discovery of novel citrus leprosis virus cytoplasmic type 2 utilizing small RNA libraries by next generation sequencing and bioinformatic analyses. J. Data Mining Genomics Proteomics, 4(129), 2153-0602.
     Cited By
217. Fujii, H., Shimada, T., Nonaka, K., Kita, M., Kuniga, T., Endo, T., ... & Omura, M. (2013). High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree genetics & genomes, 9(1), 145-153.
     Cited By
218. Sanderson, L. A., Ficklin, S. P., Cheng, C. H., Jung, S., Feltus, F. A., Bett, K. E., & Main, D. (2013). Tripal v1. 1: a standards-based toolkit for construction of online genetic and genomic databases. Database, 2013.
     Cited By
219. Serra, I. A., Bernardo, L., Spadafora, A., Faccioli, P., Canton, C., & Mazzuca, S. (2013). The Citrus clementina putative allergens: from proteomic analysis to structural features. Journal of agricultural and food chemistry, 61(37), 8949-8958.
     Cited By
220. Nwugo, C. C., Duan, Y., & Lin, H. (2013). Study on citrus response to huanglongbing highlights a down-regulation of defense-related proteins in lemon plants upon ‘Ca. Liberibacter asiaticus’ infection. PloS one, 8(6).
     Cited By
221. de Carvalho, K., de Campos, M. K. F., Domingues, D. S., Pereira, L. F. P., & Vieira, L. G. E. (2013). The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumelo. Molecular Biology Reports, 40(4), 3269-3279.
     Cited By
222. Nwugo, C. C., Lin, H., Duan, Y., & Civerolo, E. L. (2013). The effect of ‘Candidatus Liberibacter asiaticus’ infection on the proteomic profiles and nutritional status of pre-symptomatic and symptomatic grapefruit (Citrus paradisi) plants. BMC plant biology, 13(1), 59.
     Cited By
223. Chen, C., & Gmitter Jr, F. G. (2013). Mining of haplotype-based expressed sequence tag single nucleotide polymorphismsin citrus. BMC genomics, 14, 1-11.
     Cited By

2012 (7)

224. Gmitter, F. G., Chen, C., Machado, M. A., De Souza, A. A., Ollitrault, P., Froehlicher, Y., & Shimizu, T. (2012). Citrus genomics. Tree Genetics & Genomes, 8(3), 611-626.
     Cited By
225. Cheng, J., Khan, M. A., Qiu, W. M., Li, J., Zhou, H., Zhang, Q., ... & Li, S. (2012). Diversification of genes encoding granule-bound starch synthase in monocots and dicots is marked by multiple genome-wide duplication events. PLoS One, 7(1).
     Cited By
226. Li, Z. T., Gmitter, F. G., Grosser, J. W., Chen, C., & Gray, D. J. (2012). Isolation and characterization of a novel anthocyanin-promoting MYBA gene family in Citrus. Tree genetics & genomes, 8(4), 675-685.
     Cited By
227. Voo, S. S., Grimes, H. D., & Lange, B. M. (2012). Assessing the biosynthetic capabilities of secretory glands in Citrus peel. Plant physiology, 159(1), 81-94.
     Cited By
228. Zhang, L., Ma, G., Shirai, Y., Kato, M., Yamawaki, K., Ikoma, Y., & Matsumoto, H. (2012). Expression and functional analysis of two lycopene β-cyclases from citrus fruits. Planta, 236(4), 1315-1325.
     Cited By
229. Romero, P., Lafuente, M. T., & Rodrigo, M. J. (2012). The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydration. Journal of Experimental Botany, 63(13), 4931-4945.
     Cited By
230. Gambino, G., & Gribaudo, I. (2012). Genetic transformation of fruit trees: current status and remaining challenges. Transgenic research, 21(6), 1163-1181.
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2011 (4)

231. Hyun, T. K., & Kim, J. S. (2011). Genomic identification of putative allergen genes in woodland strawberry (Fragaria vesca) and mandarin orange (Citrus clementina). Plant Omics J, 4(7), 428-34.
     Cited By
232. Belknap, W. R., Wang, Y., Huo, N., Wu, J., Rockhold, D. R., Gu, Y. Q., & Stover, E. (2011). Characterizing the citrus cultivar Carrizo genome through 454 shotgun sequencing. Genome, 54(12), 1005-1015.
     Cited By
233. Ficklin, S. P., Sanderson, L. A., Cheng, C. H., Staton, M. E., Lee, T., Cho, I. H., ... & Main, D. (2011). Tripal: a construction toolkit for online genome databases. Database, 2011.
     Cited By
234. Jung, S., Menda, N., Redmond, S., Buels, R. M., Friesen, M., Bendana, Y., ... & Bett, K. E. (2011). The chado natural diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database, 2011.
     Cited By