CGD Marker Types | Citrus Genome Database

Marker Type	Marker Abbreviation	Full Marker Name or Target	Technology Reference
Fingerprinting	AFLP cDNA-AFLP fAFLP RFLP PCR-RFLP ISSR RAPD SCoT SRAP IRAP SSAP POGP VNTR	Amplified fragment length polymorphism Complementary DNA-RFLP Fluorescent AFLP Restriction fragment length polymorphism Polymerase chain reaction RFLP Inter-simple sequence repeat Random amplified polymorphic DNA Start codon targeted Sequence-related amplified polymorphism Inter-retrotransposon amplified polymorphism Sequence specific amplification polymorphism Peroxidase gene polymorphism Variable number of tandem repeats	Vos et al, 1995 Vuylsteke et al, 2006 De Curtis et al, 2004 Botstein et al, 1980 Rasmussen,2012 Zietkiewicz et al, 1994 Williams et al, 1990 Collard and Mackill, 2009 Li and Quiros, 2001 Campbell et al, 2011 Porceddu et al, 2002 Uzun et al, 2014 Nakamura et al, 1998
Feature-specific PCR with cleavage	CAPS	Cleaved amplified polymorphic sequences	Konieczny and Ausubel, 1993
Feature-specific PCR	EST marker or EST EST-SSR EST-STMS gene marker or PCR marker/primer SSR STMS STS Indel RGA/RGC SCAR	Expressed Sequence Tag SSR sequence from an EST STMS sequence from an EST Gene sequence Microsatellites, simple sequence repeats Sequence-tagged microsatellite Sequence tagged site Insertions/Deletions Resistance gene analog/candidate Sequence characterized amplified regions	Parkinson and Blaxter, 2009 Ellis and Burke, 2007 Ellis and Burke, 2007 NA Tautz, 1989 Beckmann and Soller, 1990 Green and Green, 1991 Bhangale et al, 2005 Kanazin et al, 1996 Paran and Michelmore, 1993
SNP-specific	SNP	Single nucleotide polymorphism	Ahmadian et al, 2000
Misc. markers	DArTseq Isozyme genetic marker LAMP marker	Diversity array technology Enzyme form Unknown marker type Loop-mediated isothermal amplification	Jaccoud et al, 2001 Nevo, 1987 NA Notomi et al, 2000