Expression: Effect of HLB infection on shoot and leaf growth

Overview
Analysis NameExpression: Effect of HLB infection on shoot and leaf growth
MethodIllumina (STAR package, HTSeq, DESeq)
SourcePRJNA1042812
Date performed2024-03-13

This data is from the following manuscript: Neupane A, Shahzad F, Bernardini C, Levy A, Vashisth T. Poor shoot and leaf growth in Huanglongbing-affected sweet orange is associated with increased investment in defenses. Frontiers in plant science. 2023; 14:1305815.  NCBI BioProject PRJNA1042812.  Expression values are in counts.  

Sample Tissue Treatment
1-HLY1-5th-day Buds Healthy tree buds after 5 days of pruning
2-HLY2-5th-day Buds Healthy tree buds after 5 days of pruning
3-HLY3-5th-day Buds Healthy tree buds after 5 days of pruning
4-HLY4-5th-day Buds Healthy tree buds after 5 days of pruning
5-HLB1-5th-day Buds HLB-affected tree buds after 5 days of pruning
6-HLB2-5th-day Buds HLB-affected tree buds after 5 days of pruning
7-HLB3-5th-day Buds HLB-affected tree buds after 5 days of pruning
8-HLB4-5th-day Buds HLB-affected tree buds after 5 days of pruning
1-HLY1-V1-V2 Emerging leaves Healthy trees - leaf emergence stage
2-HLY2-V1-V2 Emerging leaves Healthy trees - leaf emergence stage
3-HLY3-V1-V2 Emerging leaves Healthy trees - leaf emergence stage
4-HLY4-V1-V2 Emerging leaves Healthy trees - leaf emergence stage
5-HLB1-V1-V2 Emerging leaves HLB-affected trees - leaf emergence stage
6-HLB1-V1-V2 Emerging leaves HLB-affected trees - leaf emergence stage
7-HLB1-V1-V2 Emerging leaves HLB-affected trees - leaf emergence stage
8-HLB1-V1-V2 Emerging leaves HLB-affected trees - leaf emergence stage
Properties
Additional information about this analysis:
Property NameValue
Data source filepublic://expression/65f2047c21e32_15502-expression_part1.txt