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Overview
| Analysis Name | Citrus sinensis cv. Jinhong genome v1.0 |
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| Method | PacBio Sequel II, Illumina NovaSeq 6000 (Assembled with Hifiasm v0.16, Meryl v1.4, Verkko v1.3.1) |
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| Source | Zenodo |
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| Date performed | 2024-03-19 |
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About the assembly
For this genome, please cite Wang N, Chen P, Xu Y, Guo L, Li X, Yi H, Larkin RM, Zhou Y, Deng X, Xu Q. Phased genomics reveals hidden somatic mutations and provides insight into fruit development in sweet orange. Horticulture research. 2024 Feb; 11(2):uhad268. This data was originally downloaded from Zenodo.
Assembly metrics
| Assembly size |
627 Mb |
| Number of scaffolds |
18 |
| N50 |
35,022,480 bp |
| Predicted transcripts |
60,821 |
| Annotated genes |
60,821 |
| Assembly BUSCO score (embryophyta_odb10) |
99.1% |
| Annotation BUSCO score (embryophyta_odb10) |
93.9% |
Assembly
The Citrus sinensis cv. Jinhong genome v1.0 assembly files are available in GFF3 and FASTA format.
Downloads
Gene Predictions
The Citrus sinensis cv. Jinhong v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
Functional Analysis
Functional annotation for the Citrus sinensis cv. Jinhong genome v1.0 are available for download below. The Citrus sinensis genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
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