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Overview
| Analysis Name | Citrus australasica cv. Rainbow genome v1.0 |
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| Method | PacBio Sequel II, Hi-C, Illumina (Assembled with Hifiasm, BWA, Arima, ALSA) |
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| Source | PRJCA019902 |
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| Date performed | 2024-05-30 |
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About the assembly
For this genome, please cite Nakandala U, Furtado A, Masouleh AK, Smith MW, Williams DC, Henry RJ. The genome of Citrus australasica reveals disease resistance and other species specific genes. BMC plant biology. 2024 Apr 10; 24(1):260. This data was originally downloaded from Genome Warehouse.
Assembly metrics (Hap1 and Hap2 combined)
| Assembly size |
650 Mb |
| Number of scaffolds |
47 |
| N50 |
34,174,504 bp |
| Predicted transcripts |
81,160 |
| Annotated genes |
72,070 |
| Assembly BUSCO score (embryophyta_odb10) |
98.8% |
| Annotation BUSCO score (embryophyta_odb10) |
99.1% |
Gene Predictions
The Citrus australasica cv. Rainbow v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
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