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Overview
| Analysis Name | Citrus unshiu cv. Miyagawa Wase genome v1.0 |
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| Method | Illumina, PacBio (Assembly with PLATANUS) |
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| Source | PRJDB5882 |
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| Date performed | 2024-10-08 |
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Citation: Shimizu T, Tanizawa Y, Mochizuki T, Nagasaki H, Yoshioka T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y. Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach. Frontiers in genetics. 2017; 8:180.
Assembly Metrics
| Assembly size |
360 Mb |
| Number of scaffolds |
20,876 |
| N50 |
386,404 bp |
| Predicted transcripts |
31,732 |
| Annotated genes |
25,090 |
| Assembly BUSCO score (embryophtya_odb10) |
96.2% |
| Annotation BUSCO score (embryophyta_odb10) |
92.2% |
Assembly
The Citrus unshiu cv. Miyagawa Wase genome v1.0 assembly files are available in FASTA format.
Downloads
Gene Predictions
The Citrus unshiu cv. Miyagawa Wase v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
Functional Analysis
Functional annotation for the Citrus unshiu cv. Miyagawa Wase genome v1.0 are available for download below. The Citrus unshiu genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
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