Citrus reticulata genome v1.0

Overview
Analysis NameCitrus reticulata genome v1.0
Methodwhole genome shotgun sequencing, Illumina (Assembly with Platanus and GapCloser)
SourceHuazhong Ag. Univ.
Date performed2018-07-09

 

About the assembly

For this genome, please cite Wang et al, Genome of wild mandarin and domestication history of mandarin.  This data was downloaded from the Citrus sinensis Annotation Project website, please download the raw data from the project website.  Please see the links to the left to view the genome in JBrowse.

Size of assembled scaffolds (>500 bp) 334 Mb
Number of scaffolds 42,714
Scaffold N50 1,705,373 bp
Predicted transcripts 42,653
Annotated genes 28,833
Properties
Additional information about this analysis:
Property NameValue
JBrowse URLhttps://www.citrusgenomedb.org/jbrowse/index.html?data=data%2FCreticulata_Hzau_v1.0&loc=
Analysis Typewhole_genome
Downloads

To download the genome assembly and annotation files, please visit the Citrus sinensis Annotation Project webpage.  

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.