DY270847

Overview
NameDY270847
Unique NameDY270847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1148
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.744e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  142 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 390
            LV+VDF A WCGPCR + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.278e-13
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  106 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV------------DKVVGAKKEELQQTIAKHLATA 402
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V             + +GA  E+L     K +A A
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEKLGGLAQKRVAGA 121          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.278e-13
Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  109 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 381
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVGA +  +++ I
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.975e-13
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  145 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 381
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V GAK ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.975e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  145 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 393
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.975e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  145 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 393
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.885e-13
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   46 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 387
            AE+   EEG V      E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  GA   +L+++I++
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.885e-13
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  148 VVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 393
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + I KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.074e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  148 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 393
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DY270847 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.074e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  148 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 393
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of DY270847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIO_CHLPN1.744e-1346.43Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_FUSCU2.278e-1341.23Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_ECHGR2.278e-1340.66Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXF_MESCR2.975e-1348.75Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO1_ANASP2.975e-1345.88Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO2.975e-1345.88Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
TXND2_MOUSE3.885e-1335.96Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO_STAS13.885e-1350.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STAAW5.074e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU5.074e-1348.81Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YO22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270847 ID=DY270847; Name=DY270847; organism=Citrus clementina; type=EST; length=1148bp
AGAAGTATCGTTCTGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGA
AATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGG
CCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTT
GTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTT
CTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTG
ATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATG
CCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGG
AGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTG
CTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTATAGGC
TATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGT
TATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTC
CATGAACCTCATACTGTGGGTCTTTACAATAATTTTATTTTCCTATTTGT
TGTTGGAGCCTAATTTTTGATATTGAAAGTGTACTCTTATTGGTTTAATA
CAAAATAAAATAAAACCCCATCTTTCTCGTGGTAAGTTTGATCTATAAAA
AACCCTTTACTTACCTAATTTGCCTGCACGAAAAGGGCCAATCTACTTCT
CAAATAAAACTCCTTTCTTTTCGCCTCCGCCTATTCACCCCTCTCCTTAT
CTTTCTTTTATATTAGTATATAGCATATCTGCGGTCCCAACTACTCGATT
CGTCTTAACACCTCTGTGCACTGTCTTACTTGTCTATACTACTTACTCTC
TCCCTAAATCCTCACGCTCTGATTATTCATCACCCACCCATGACGTCGAA
CATCTTCTCTCTCGCCTCCACTCATCATTATTTACTATCAGTTCATATTC
TCGCAACTGCTCCGTTAATCGTGTCCCAACTTCTATTTAAACTTACTGAC
GGGTATTTATTCATTTTAACATGCCTGTAAGAATGATGTATTGTCATTTT
TAACTTTGCATGCTATCTGTTTATGTTCAGATATCTAAAACTTTAATA
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