DY270854

Overview
NameDY270854
Unique NameDY270854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAE (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain Newman) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAC (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain COL) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAA9 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain JH9) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAA8 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAA3 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAA2 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain JH1) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAA1 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCPA (Glycyl-tRNA synthetase OS=Mycobacterium paratuberculosis GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 80/217 (36.87%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLA-FWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP--LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            TV N  +RR F  PS +IY G    +DYGP G   K N+   +WR      ED++ +D   + P  V  ASGHVE F D +V+       YRADHL+                 +A E +H     + L+            I  PDT  P   ++P  FN+M +T +GP     G  Y+RPETAQGIFVNF ++      K PF   QIG++FRNE
Sbjct:   11 TVVNLAKRRGFVYPSGEIYGGTRSAWDYGPLGVEFKENIKRQWWRSVVTGREDVVGLDSSIILPRQVWVASGHVEVFHDPLVESLITHKRYRADHLI-----------------EAYEAKHGHPPPNGLA-----------DIRDPDTGEPGRWTEPREFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNE 199          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_GEOTN (Glycyl-tRNA synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 76/210 (36.19%), Postives = 109/210 (51.90%), Query Frame = 1
Query:  238 ERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIG--PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            + R F  P  +IY G+A  +DYGP G  +K+N+   W + FV E    + +D   +      +ASGH+  F D MV  ++    +RAD L+                E+A E + +  V+D L   ++   I+EY I  P+      ++   FNLMF+T  G   S     Y+RPETAQGIFVNFK++      KLPF  AQIG++FRNE
Sbjct:   19 KHRGFVFPGSEIYGGLANTWDYGPLGVELKNNIKRAWWKKFVQESPHNVGLDAAILMNPKTWEASGHLGNFNDPMVDCKQCKARHRADKLI----------------EQALEEKGIEMVVDGLPLAKMEELIREYDIACPECGSRDFTNVRQFNLMFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNE 212          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_CLOTH (Glycyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 78/211 (36.97%), Postives = 115/211 (54.50%), Query Frame = 1
Query:  238 ERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT--KNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            + R F  P  +IY G+A  +DYGP G  +K+N+   W + FV E    + VDC  +    V  ASGHV  F+D ++  ++  T +RAD +++++ N K  +++ +               D  S E L   I+E G+T P+   KN  +D   FNLMF+T  G +       Y+RPETAQGIFVNFK++      K+PF   QIG++FRNE
Sbjct:   15 KNRGFIYPGSEIYGGLANSWDYGPLGVELKNNIKKAWWKKFVQENPYNVGVDCAILMNPQVWVASGHVGGFSDPLIDCKECKTRHRADKMIEEW-NLKNNENVKV---------------DGWSNEMLMNYIREKGVTCPECGGKN-FTDIRKFNLMFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNE 208          
The following BLAST results are available for this feature:
BLAST of DY270854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
SYG_STAAE2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAC2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA92.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA82.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA32.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA22.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA12.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_MYCPA2.146e-2436.87Glycyl-tRNA synthetase OS=Mycobacterium paratuberc... [more]
SYG_GEOTN2.146e-2436.19Glycyl-tRNA synthetase OS=Geobacillus thermodenitr... [more]
SYG_CLOTH2.146e-2436.97Glycyl-tRNA synthetase OS=Clostridium thermocellum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270854 ID=DY270854; Name=DY270854; organism=Citrus clementina; type=EST; length=1130bp
CTTCGGCGAACCCTAGCCGAGAAGCAATCGGCTGTCGACGCTCAAGGCAA
TGCCGTCAGAGCTCTCAAAGCCGCAAAAGCTTCCAAGTCCGAAATCGACG
CTGCTATTGAATCACTCAATCGATTGAAACTCGAGAAGTCATCGGTCGAA
AGGGAGCTCCAGAGTGTCGTTAGTGGTAGCGGCGGGGGTGCTTCTGTTAA
CAGGGAGGCTTTCCGTCAGACTGTCTTTAACACTCTTGAACGGCGTTTGT
TTTTTATTCCATCTTTCAAGATTTACCGTGGTGTTGCTGGTCTTTATGAT
TACGGGCCACCTGGCTGTGCCGTTAAGTCTAACGTTCTTGCTTTTTGGCG
TCAGCACTTTGTTCTGGAAGAGGATATGTTAGAGGTGGACTGCCCATGTG
TGACTCCTGAGGCTGTGTTGAAAGCGTCTGGTCATGTTGAAAAATTTACT
GACCTTATGGTTAAGGATGAGAAAATGGGGACCTGTTATCGTGCTGACCA
CTTGCTTAAGGATTTCTGTAATGAGAAGCTTGAGAAAGACCTTAGCTTAT
ATGCAGAGAAGGCTGCGGAATTGAGACATCTACTGGCAGTCTTGGATGAT
TTATCAGCCGAGGAGCTTGGTGCTAAGATCAAGGAGTATGGTATTACTGC
TCCTGACACAAAGAATCCGCTGTCTGATCCCTATCCATTCAACTTAATGT
TTCAAACATCAATTGGCCCCTCCGGGCTGATCCCTGGGTATATGCGCCCT
GAAACAGCACAAGGCATATTTGTGAATTTTAAAGATTTGTATTATTACAA
TGGAAACAAACTCCCTTTTGCTGCTGCCCAAATTGGGCAGGCTTTTAGGA
ATGAAAAATCCCTCCCCAAGGCCCTTTGAAAGTTCGTGAATTCCACTTGC
CAAAATGAACCCTTTGGTGACCCTCAGAACAATCCCACCCAAAATTTCAA
AAATTTGCAAATTTGGATTTCCTGAAGTTCCCAAGGGGAGGAAAAAATGT
CTCGGGAAATTCTGCCAAAAAGGATATCCCCTAAGGGGAAAGCTGTTTTT
CAAGGGAAAAAAAAAAACAAGGAAAATCTCTTGGGTTTTTTTTTTGGGGA
AAAAAAAATTTTTCCTTTTTCAAACAGGGG
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