DY270887

Overview
NameDY270887
Unique NameDY270887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1214
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_DEBHA (Protoheme IX farnesyltransferase, mitochondrial OS=Debaryomyces hansenii GN=COX10 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.490e-26
Identity = 70/182 (38.46%), Postives = 102/182 (56.04%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            Y +L+K  L++LV  +S   +A+ S  T+ L  L +   GT + + +AN++N   E   D KM RT+ RP+  G IS + A  +A   G  G  +L    N   + L   N++LY+++YT LK+   +NTWVGAIVGAIPPL+GW A+          L   LY WQ PHF AL++   + Y
Sbjct:  144 YVKLTKPNLTILVTLSSICSYAI-SPYTVSLPELLFLTMGTALCSGAANAINMGREPEFDKKMPRTVGRPVVRGLISPKQAYQFAGITGSLGCTMLFLGVNPTVSFLGFLNIVLYSWIYTSLKRKSIINTWVGAIVGAIPPLMGWAASSPLDHPGAWCLAGLLYAWQFPHFNALSHNIADQY 324          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_THET8 (Protoheme IX farnesyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ctaB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.947e-26
Identity = 72/187 (38.50%), Postives = 104/187 (55.61%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            R Y  L+K R+  L++ T+  G  + +     L        G  M+A +AN++N + +   DA+MKRT +RP  + R+S R A+ +A ++ V G A+L W AN+L A LA   LI Y  VYT  LK+    N  +G   GA PPL+GW A  G +SL    L A ++FW   HF ALA + ++DY A
Sbjct:  328 RDYLALTKPRVISLLLFTALFGALIAAKGWPGLGVFLAVALGGYMMAGAANAINMVVDRDIDARMKRTAKRPTVTQRVSSRDALLFAFALAVLGFAVLWWGANLLAATLALMGLIWYVLVYTLYLKRRTWHNIVIGGAAGAFPPLVGWAAVTGELSLFAWYLFALIFFWTPVHFWALALMIQDDYRA 514          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_THET2 (Protoheme IX farnesyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ctaB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.947e-26
Identity = 72/187 (38.50%), Postives = 104/187 (55.61%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            R Y  L+K R+  L++ T+  G  + +     L        G  M+A +AN++N + +   DA+MKRT +RP  + R+S R A+ +A ++ V G A+L W AN+L A LA   LI Y  VYT  LK+    N  +G   GA PPL+GW A  G +SL    L A ++FW   HF ALA + ++DY A
Sbjct:  328 RDYLALTKPRVISLLLFTALFGALIAAKGWPGLGVFLAVALGGYMMAGAANAINMVVDRDIDARMKRTAKRPTVTQRVSSRDALLFAFALAVLGFAVLWWGANLLAATLALMGLIWYVLVYTLYLKRRTWHNIVIGGAAGAFPPLVGWAAVTGELSLFAWYLFALIFFWTPVHFWALALMIQDDYRA 514          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_OPITP (Protoheme IX farnesyltransferase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=ctaB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.947e-26
Identity = 71/184 (38.59%), Postives = 97/184 (52.72%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            Y EL+K RLSML V T+  G+ L +    D   L     GT   A    +LNQ  E   DA MKRT  RP+P+G+++   A      + +    LL    + L A      +  Y   YTP K+    +T +GA+ GA PPL+GW+A  G V+  G +L   L+FWQ PHFMA+A+  R DY+A
Sbjct:   14 YLELTKPRLSMLSVMTALVGY-LAARPPWDPIQLALLVLGTSAAAGGVAALNQWLEHDTDAHMKRTADRPIPAGKVATGSAFVLGVLMCIGSLFLLYALVHPLAALFTLLTIFSYLGWYTPAKRWSRWSTEIGAVAGAFPPLIGWSAGEGRVTALGWVLFGVLFFWQVPHFMAVAWTYRKDYSA 196          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_AGRT5 (Protoheme IX farnesyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ctaB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.542e-26
Identity = 70/187 (37.43%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            R Y+EL K R+  LVV T+  G  L  G    + GL        + A ++ +LN  ++   DA M RT +RP+PSGRI+ R A+ +  ++      +L    N  +AGL A  +  YA VYT  LK+  P N  +G   GA PP+LGW    G VSL+ +IL   ++ W   HF ALA     DY A
Sbjct:   23 RDYFELLKPRVMSLVVFTAFAGLVLAPGEINPILGLI-AILCIAVGAGASGALNMWYDADIDAVMTRTAKRPIPSGRIAPREALAFGLTLSAFSVVILGLAVNWFSAGLLAFTIFFYAVVYTMWLKRSTPQNIVIGGAAGAFPPMLGWACVTGGVSLDSVILFLIIFLWTPAHFWALALFKMRDYGA 208          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE1_PSEPW (Protoheme IX farnesyltransferase 1 OS=Pseudomonas putida (strain W619) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.320e-26
Identity = 69/186 (37.10%), Postives = 106/186 (56.99%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y EL+K ++ +L++ TS  G  L + + +  + L +   G  + A  A ++N + +   DA M RT +RPL  GR++   A+ +A ++ + G ALL    N LTA L  ++L+ YA +YT  LK+  P N  +G + GA PPLLGW A  GHVS   ++L   ++ W  PHF ALA   + +YA
Sbjct:   13 RDYLELTKPKVVVLMLITSLVGMFLATRAGVPWSVLLFGNLGIALCAGGAAAVNHVLDRRIDALMARTHKRPLAEGRVAPLPALLFALALALLGMALLLMFTNALTAWLTLASLLGYAVLYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVSGHVSAEPLLLVLIIFAWTPPHFWALAIHRKEEYA 198          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_THEEB (Protoheme IX farnesyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=ctaB PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.320e-26
Identity = 69/184 (37.50%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            Y +L+K RL +L + T+     +     +    L  T       AA+AN++N L++   DA M+RT  RPLP+GR++   AV  A  + +   +LLA  AN+L+A LA + + +Y  VYT  LK+  P N  +G   GAIPPL+GW A  G +S    +L   ++ W  PHF  LA L + DYA
Sbjct:   21 YVQLTKPRLILLFLITTAAAMEVAGQGRVSPQLLLITLGSGTCAAAAANTINCLYDRDIDAVMERTRHRPLPAGRVAPWEAVFLAVLLAITAFSLLAAFANLLSACLAMAGIAVYVGVYTHWLKRSSPQNIVIGGAAGAIPPLVGWAAVTGELSWAAWVLFGMIFVWTPPHFWPLAMLIQEDYA 204          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_ROSS1 (Protoheme IX farnesyltransferase OS=Roseiflexus sp. (strain RS-1) GN=ctaB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.320e-26
Identity = 65/184 (35.33%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            Y  L+K  +  L++ T+ T   +      +L+ + WT  G  ++A+ ++S+N   +   D  M RT RRP+PSGRI   HA+    ++GV    +LA   N+L A LA +  + Y F+YT  LK+    N  +G   GA PPL+GW A  G ++   ++L   ++FW  PHF ALA + + DYA
Sbjct:  254 YISLTKPGVISLLILTTITSMYITPAGIPELSLVLWTTLGGWLMASGSHSINCYLDKDIDVNMGRTGRRPIPSGRIPAWHALALGIALGVVAFVILALFVNLLAAILALAGFLYYVFIYTIWLKRTSKHNIVIGGGAGAFPPLVGWAAVTGSLAPEALLLWLIVFFWTPPHFWALALIRQKDYA 437          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_MYXXD (Protoheme IX farnesyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=ctaB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.320e-26
Identity = 70/181 (38.67%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            L+K RLS LV+ T+  G  L  G    +  L  T   T     +AN+LN  +E  +D  M RT  RPLPSGR+    A+ +  S+       LA  AN+LTA L    L+ Y   YTPLK        VG + GA+PPL+GWTA    + + G  L A ++ WQ PHF+A+A   + +Y A
Sbjct:   18 LTKPRLSSLVLVTAAGGMWLAPGHMGAVNALV-TLLATAGTVGAANALNCYWERHSDQFMDRTRNRPLPSGRMEPAVALWFGISLAAVSLPALALGANVLTAALGLVALLSYVLAYTPLKARTSAAMLVGGVPGALPPLMGWTAVTNQMDVGGFSLFAIMFLWQMPHFIAIALFRKEEYRA 197          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COX10_DICDI (Probable protoheme IX farnesyltransferase, mitochondrial OS=Dictyostelium discoideum GN=cox10 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.320e-26
Identity = 73/186 (39.25%), Postives = 100/186 (53.76%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSG-STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVA--GTALLAWKANMLTAG-LAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            Y  L K  +++ V  T+  G+         D   L     GT + + SAN  NQ  E+ +D KM RT  RPL  G I+   A  W  S+ +   G   +A   ++   G LAA N+ILY + YT LK++ P+NTW+GA VGAIPPL+G  AA G     GM+L   +Y WQ PHF+AL+ + R  Y
Sbjct:  149 YMTLIKLPITVYVTLTAIAGYVAACPIGAFDWVVLSQVSIGTFLASCSANIHNQEIEVQHDRKMPRTKDRPLVIGTINRGKA--WVGSIALLTLGFGTMAVTPSLFVPGTLAACNVILYCW-YTDLKRVTPLNTWIGAFVGAIPPLIGSVAATGEFEAIGMLLATFMYIWQIPHFLALSQVLREQY 331          
The following BLAST results are available for this feature:
BLAST of DY270887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
COX10_DEBHA1.490e-2638.46Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COXX_THET81.947e-2638.50Protoheme IX farnesyltransferase OS=Thermus thermo... [more]
COXX_THET21.947e-2638.50Protoheme IX farnesyltransferase OS=Thermus thermo... [more]
COXX_OPITP1.947e-2638.59Protoheme IX farnesyltransferase OS=Opitutus terra... [more]
COXX_AGRT52.542e-2637.43Protoheme IX farnesyltransferase OS=Agrobacterium ... [more]
CYOE1_PSEPW3.320e-2637.10Protoheme IX farnesyltransferase 1 OS=Pseudomonas ... [more]
COXX_THEEB3.320e-2637.50Protoheme IX farnesyltransferase OS=Thermosynechoc... [more]
COXX_ROSS13.320e-2635.33Protoheme IX farnesyltransferase OS=Roseiflexus sp... [more]
COXX_MYXXD3.320e-2638.67Protoheme IX farnesyltransferase OS=Myxococcus xan... [more]
COX10_DICDI3.320e-2639.25Probable protoheme IX farnesyltransferase, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270887 ID=DY270887; Name=DY270887; organism=Citrus clementina; type=EST; length=1214bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTNAA
TGGAATGATTCTCCCTGCAACTCTCTATTTTTGGCAAAAACCCCATTTTA
TGGCTCTTGCCTACTTGTGCCGCAACGATTATGCTGCCCGGAGGATATAG
GATGATCTCCCTTGCTGAAGCTTCCGGTCAAAAAACTGCTTTGGTGGCCC
TCAAGAAACTGCTGGTACTGGGCCCCTTTGGGAAACTTGGCCCTATGATT
GGGGGGTGAATTCCTGGTTGGTTTTTTTCTTAAATCCACCCTTGAAACCC
TCAAACAAAAAAATGGCGCGGGCCTTTTTTCTTTTCTATCCAAAACCAAA
AAATACCCAAAAAACCCACAAAAAAAAGTTTTTCCGGGGCCAACCCCCCC
CTGTAATCTTTTCCCAAACTTTTCTTATTGTTCCCGGGGGCCCCCCATTT
TTTTCCCCGCCCTC
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