DY270910

Overview
NameDY270910
Unique NameDY270910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.047e-35
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            F RTK HVN+GTIGH+DHGKTTLTAAITK  A  G  K +AFDEIDKAPEE++RGITI+TAHVEYETAKRHYAHVDCPGHADY+K
Sbjct:    6 FERTKPHVNIGTIGHIDHGKTTLTAAITKHAALRGFGKFVAFDEIDKAPEERERGITISTAHVEYETAKRHYAHVDCPGHADYIK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.285e-35
Identity = 72/87 (82.76%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVNVGTIGHVDHGKTTLTAAIT  LA +GKA+A  +DEID APEEK RGITI TAHVEYET KRHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNVGTIGHVDHGKTTLTAAITMTLAAQGKAQARKYDEIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.285e-35
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+HVEYETA RHYAHVDCPGHADYVK
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBL (Elongation factor Tu OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.285e-35
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+HVEYETA RHYAHVDCPGHADYVK
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.285e-35
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+HVEYETA RHYAHVDCPGHADYVK
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.285e-35
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+HVEYETA RHYAHVDCPGHADYVK
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB1 (Elongation factor Tu OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.285e-35
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+HVEYETA RHYAHVDCPGHADYVK
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.903e-35
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 2
Query:  206 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            S   F R K H N+GTIGHVDHGKTTLTAAIT  LAE G  KA+A+D+IDKAPEEK+RGITI+TAHVEYET KRHYAHVDCPGHADYVK
Sbjct:    2 SKEKFVRNKPHCNIGTIGHVDHGKTTLTAAITITLAELGGGKAVAYDQIDKAPEEKERGITISTAHVEYETEKRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.903e-35
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 2
Query:  215 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            ++ R K HVN+GTIGHVDHGKTTLTAAITKVL+E+G+A+ + FDEIDKAPEEK+RGITI+T+HVEYET  RHYAH+DCPGHADYVK
Sbjct:    5 SYKREKPHVNIGTIGHVDHGKTTLTAAITKVLSEKGQAQKMDFDEIDKAPEEKERGITISTSHVEYETPSRHYAHIDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RICAH (Elongation factor Tu OS=Rickettsia akari (strain Hartford) GN=tuf PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.015e-35
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G AKA A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADY+K
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITTVLAKTGGAKATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYIK 90          
The following BLAST results are available for this feature:
BLAST of DY270910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESAH4.047e-3581.18Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_THEEB5.285e-3582.76Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_CLOBM5.285e-3580.46Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBL5.285e-3580.46Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBK5.285e-3580.46Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH5.285e-3580.46Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOB15.285e-3580.46Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_PELUB6.903e-3578.65Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_CHLT36.903e-3577.91Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_RICAH9.015e-3579.31Elongation factor Tu OS=Rickettsia akari (strain H... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270910 ID=DY270910; Name=DY270910; organism=Citrus clementina; type=EST; length=1250bp
CTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCGGAATCAATGGCTT
CGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGTGCCGTTTTCATCC
CAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCTCCGACGCTTTCTC
CGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCTGTTAACCCCTGGT
GGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCACGTGAATGTGGGA
ACAATTGGACACGTTGATCATGGGAAGACTACACTTACTGCTGCGATTAC
CAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATTGCCTTTGATGAAA
TTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCAACGGCC
CATGTAGAGTATGAGACTGCTAAGCGTCACTATGCACATGTTGACTGTCC
TGGACATGCTGATTATGTTAAAGTAAGAAGTAAATATTCAATGCTGCCGG
GTAAATTTAGTTGTTAGAGCGATCCTCTGGGAAATTGATGTATTCTCAGT
GAAAAAAAAAAAGAGAAACAAAAGAAAGAAAGAAAAATTAAAAAGGCAAA
AATGATGTTAAGAGAATTCGAAGCTGCTGAGGTGTTAGTATGTTCCCTCA
ACAGCAACCTAATTTTATGGATAAAGTTTTACATTTGAAGCATAGCAGAA
GCAAAAGATTTAGCATGCTAACATTTTAAAGGACCTGCATTCATGTCTTG
CACGGTTTAGATATTTCATTTTTTTCTTGAAGTTTTGTCCCATCTAATTT
TCTAAACTCATATTCATTTCCAGAGATGTCAACAGGTTTCCCGAGTTTTT
TAGTTAACCACATGAAATAATCATGTAACCAACTGTTTTCTTGTGATTGA
TTTGTAAAACATGATTACTGGAGCTGCCCAATGGGACGGGGGGAATTTTG
GGTTGTCTCTGCTCCCTGGAGGGCCAATGCCCCAAAAAAAAGGAACAAAT
TCCTTCTTGGCACGTCAGGGGTGGGGGGGCCCCTCCCTTTGGGGGGCTTC
CTAAAAAAAGATTAAACTTTGTTTTAAAAAAAAAAAAAATTTGTGGGAAC
CTTGGGGGAAAAGGGGGACCCCCCCAAAAAATTTTCTTACCTTCTTCAAA
AATTTTCCCGTGGGGGAGAAAAAAAAAAACCCCATTTATTAATTTAAGAA
GGCCCTTCTCCCCCACAAATTTTCTCCTCCTTTTTACTAAAGAAGGGGGA
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