DY270912

Overview
NameDY270912
Unique NameDY270912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1171
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.045e-29
Identity = 72/189 (38.10%), Postives = 113/189 (59.79%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G K G+  L+      +    VV  A++    + R+GT +   R  VRGGGRKP+ QK TGRAR+GS R+P   GGG+VFGP PR ++  I KK +RL            E+ +VV+EF  KFE PKTK+F +++    +D  +KA  ++ E +E+   ++RN+  +K++ P  +N+ DI++++ LV+T
Sbjct:   11 GTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVD--KKALLVLEEDNESAVLAARNLSNVKIVEPEGINVLDIMNSDKLVIT 195          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_PETMO (50S ribosomal protein L4 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.364e-29
Identity = 86/218 (39.45%), Postives = 122/218 (55.96%), Query Frame = 3
Query:  129 SPLPILSFTGEKIGETYLDLKSAA--PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLV---MEVSENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVLTPSTVD 737
            S + I +   EK+G   LD+K      D    V++R +   + NKR GTAST TR EV GGGRKP+ QK TGRAR GS R+PL   GGV FGPKPR++   +NKK KRL             N IV++E   KFE+P+TK+    + ++G++   K  FL     E  EN + S+RN+  +K++              LN+FD++++E +VLT   V+
Sbjct:    2 SQIDIYNIQNEKVGT--LDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNLIVLDEV--KFEKPRTKDVKNILSKFGME-DTKVLFLFPYHQEQYENFKLSARNLPKVKVIIADNPGQNKKNVDGLNVFDLINSEKIVLTKEMVN 214          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.364e-29
Identity = 76/198 (38.38%), Postives = 111/198 (56.06%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 734
            + +  GE++GE  L  +    +    V+H A+   + N+R+GT  T TR EVRGGGRKP+ QK TGRAR GS+R+P+   GG+VFGP PRD++I + KK +RL            +N IV++      + PKTK+ +  +     D   KA  +      NVEKS+RNI  +K L    +N++D+L    LV+T   V
Sbjct:    6 LYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRILGNLKAD---KALVVTATRDLNVEKSARNIEGVKPLKADGVNVYDLLKYTKLVITKDAV 198          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CHLPB (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.364e-29
Identity = 72/196 (36.73%), Postives = 117/196 (59.69%), Query Frame = 3
Query:  135 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719
            L +L+  G + GE   L+    + + +   ++  + + M N+R+GT     R EVRGGGRKPY QK TG AR+GS R+PL  GGG +FGP+PRD+ +K+NKK K+L               +VVE+F   F++ KT++  E ++  GLD  +K   L+ E ++ + +S RNI  L+++     + +DILD++T+++
Sbjct:    3 LKVLNTGGSETGEVVTLNDAVFSAEVSEHAMYLDVKSIMANRRQGTHKAKNRSEVRGGGRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANEGGIVVVEDF--VFDQIKTRQMAEVLKNLGLD-SRKTLMLMPEHNDIIVRSGRNIPKLQVVVADNASTYDILDSQTVLV 195          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.782e-29
Identity = 71/200 (35.50%), Postives = 112/200 (56.00%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755
            G+K+G+  L  K    +  + V+H+ ++  + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P    GGVVF PKPRD+S+ I K  KR+               +++E  +   + PKTKE ++ +  +     +K   +  E ++N+ KS+RNI  + +L    +N++DIL  +  ++T   V  +   Y
Sbjct:   11 GQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFN---AKKTLIVTEESNKNIYKSARNIEGVTVLPVNNINVYDILRYDKFIITKDAVSKIEEVY 205          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_THEM4 (50S ribosomal protein L4 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.970e-29
Identity = 85/210 (40.48%), Postives = 116/210 (55.24%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS--ENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVLTPSTV 734
            + +  GE IG   L  +  A +  + V+ R +   + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P    GGV  GPKPR +  ++NKK KRL             N +VV+  D KFE+P+TK+  E ++  GL+ ++    L  + S  ENV+ S RNI  +K+L              LN++DIL+ + LVL   TV
Sbjct:    6 LFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD--DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVLIADNPGVDRVNIDGLNVYDILNHDKLVLLQGTV 213          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_SYNAS (50S ribosomal protein L4 OS=Syntrophus aciditrophicus (strain SB) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.970e-29
Identity = 74/203 (36.45%), Postives = 116/203 (57.14%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNG 749
            +      K+ E  L+      +   AV++  +   M ++R GTA+T  R +V GGG+KP+ QK TGRAR G++R+P+  GGG+VFGP PRD+   + KK ++             +  +V+++F    +  KTK+F E + R+GL   +KA F+  E +E +EKSSRNI  +KM+    LN++D+L+ E LV+    V  L G
Sbjct:   16 VFDINKNKVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGGGKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQGQKLVVLKDF--PLDEIKTKKFKEVVDRFGL---KKALFVTEERNEFLEKSSRNIAGIKMVRSEGLNVYDVLNHEHLVIIEPAVKKLEG 213          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_GEOSW (50S ribosomal protein L4 OS=Geobacillus sp. (strain WCH70) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.970e-29
Identity = 75/195 (38.46%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737
            +GE IGE  L+      +  + V+  A+I    + R+GT  T  R EV GGGRKP+ QK TGRAR+GS R P   GGG VFGP PR +S K+ KK +RL             N +V++      E PKTKE ++ +    +D  +KA  +  +V+ENV  S+RNI  + ++T   +N+ D+L+ + LV+T + V+
Sbjct:   10 SGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNIVVLDNL--TLEAPKTKEMVKILNNLSVD--RKALIVTDDVNENVTLSARNIPGVTVVTANGINVLDVLNHDKLVITKAAVE 200          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CLOPS (50S ribosomal protein L4 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.185e-29
Identity = 71/200 (35.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755
            G+++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E+ +  FE PKTKE ++ +  +     +K   +  EV+ENV KS+RNI  + ++    +N++D+L+ +TL++T   V+ +   Y
Sbjct:   11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLEDLN--FEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIEGVTVMPVNNINVYDLLNCKTLMITKEAVNKIEEVY 203          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_THEAB (50S ribosomal protein L4 OS=Thermosipho africanus (strain TCF52B) GN=rplD PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.772e-29
Identity = 88/205 (42.93%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE--NVEKSSRNIGTLKML------TPRT----LNLFDILDAETLVLTPSTV 734
            GE IG   L  +  A +    V+ R +   + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P    GGV  GPKPR +  ++NKK KRL             N IVV+E   KF+RPKTK+  E ++  GL+ ++    L  +V E  NV+ S RNI  +K++        RT    LN++DIL+ + LVL   TV
Sbjct:   11 GENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKEGNLIVVDEI--KFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYVNVKISGRNIPGVKVIIADNPGVDRTNIDGLNVYDILNHDKLVLLQGTV 213          
The following BLAST results are available for this feature:
BLAST of DY270912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PEDPA1.045e-2938.1050S ribosomal protein L4 OS=Pediococcus pentosaceu... [more]
RL4_PETMO1.364e-2939.4550S ribosomal protein L4 OS=Petrotoga mobilis (str... [more]
RL4_DESRM1.364e-2938.3850S ribosomal protein L4 OS=Desulfotomaculum reduc... [more]
RL4_CHLPB1.364e-2936.7350S ribosomal protein L4 OS=Chlorobium phaeobacter... [more]
RL4_CLOTE1.782e-2935.5050S ribosomal protein L4 OS=Clostridium tetani GN=... [more]
RL4_THEM43.970e-2940.4850S ribosomal protein L4 OS=Thermosipho melanesien... [more]
RL4_SYNAS3.970e-2936.4550S ribosomal protein L4 OS=Syntrophus aciditrophi... [more]
RL4_GEOSW3.970e-2938.4650S ribosomal protein L4 OS=Geobacillus sp. (strai... [more]
RL4_CLOPS5.185e-2935.5050S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_THEAB6.772e-2942.9350S ribosomal protein L4 OS=Thermosipho africanus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270912 ID=DY270912; Name=DY270912; organism=Citrus clementina; type=EST; length=1171bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAACTGTTGATTTCCTGAATGGCA
GGTATGGGGTCGAGTTCAAGGGAGATGGCGATGAAGAAGAAGAAAAGAAG
TGAACCAGGGGAGCAGGGGAGGAAAGTGGATGCACCAAAAAATGGATTCA
AAGTCTGGGGGCAGTTTTCCCCTTGAATGCCCAAGGGATCCATTTATTGG
CGACACATTTGAATTTAAAGAATTTTTTTTTTTCTTTATATTGCCTAAAC
CAAAAAATTGTGTTAATGGGTGGCGGCGGGAACCTCGATCCAACCCAAAA
TTTTGGGGTAAAATTAATAAGTGGAAAACTTTTTTGGGAATTTTTGGAAA
CTGTGCCCCTCCCAAGGGAAAAAAAAAAAATTGTAAGGAAGTTTTTGTTT
ATTCTATCCCCCCTTTTTGTCAAAATGTTTTATGTGTGCGCATTCTTTTG
GGGGGGGGTTAATAGTTTTTC
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