DY270912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.045e-29 Identity = 72/189 (38.10%), Postives = 113/189 (59.79%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G K G+ L+ + VV A++ + R+GT + R VRGGGRKP+ QK TGRAR+GS R+P GGG+VFGP PR ++ I KK +RL E+ +VV+EF KFE PKTK+F +++ +D +KA ++ E +E+ ++RN+ +K++ P +N+ DI++++ LV+T Sbjct: 11 GTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVD--KKALLVLEEDNESAVLAARNLSNVKIVEPEGINVLDIMNSDKLVIT 195
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_PETMO (50S ribosomal protein L4 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplD PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.364e-29 Identity = 86/218 (39.45%), Postives = 122/218 (55.96%), Query Frame = 3 Query: 129 SPLPILSFTGEKIGETYLDLKSAA--PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLV---MEVSENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVLTPSTVD 737 S + I + EK+G LD+K D V++R + + NKR GTAST TR EV GGGRKP+ QK TGRAR GS R+PL GGV FGPKPR++ +NKK KRL N IV++E KFE+P+TK+ + ++G++ K FL E EN + S+RN+ +K++ LN+FD++++E +VLT V+ Sbjct: 2 SQIDIYNIQNEKVGT--LDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNLIVLDEV--KFEKPRTKDVKNILSKFGME-DTKVLFLFPYHQEQYENFKLSARNLPKVKVIIADNPGQNKKNVDGLNVFDLINSEKIVLTKEMVN 214
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.364e-29 Identity = 76/198 (38.38%), Postives = 111/198 (56.06%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 734 + + GE++GE L + + V+H A+ + N+R+GT T TR EVRGGGRKP+ QK TGRAR GS+R+P+ GG+VFGP PRD++I + KK +RL +N IV++ + PKTK+ + + D KA + NVEKS+RNI +K L +N++D+L LV+T V Sbjct: 6 LYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRILGNLKAD---KALVVTATRDLNVEKSARNIEGVKPLKADGVNVYDLLKYTKLVITKDAV 198
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CHLPB (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplD PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.364e-29 Identity = 72/196 (36.73%), Postives = 117/196 (59.69%), Query Frame = 3 Query: 135 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719 L +L+ G + GE L+ + + + ++ + + M N+R+GT R EVRGGGRKPY QK TG AR+GS R+PL GGG +FGP+PRD+ +K+NKK K+L +VVE+F F++ KT++ E ++ GLD +K L+ E ++ + +S RNI L+++ + +DILD++T+++ Sbjct: 3 LKVLNTGGSETGEVVTLNDAVFSAEVSEHAMYLDVKSIMANRRQGTHKAKNRSEVRGGGRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANEGGIVVVEDF--VFDQIKTRQMAEVLKNLGLD-SRKTLMLMPEHNDIIVRSGRNIPKLQVVVADNASTYDILDSQTVLV 195
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.782e-29 Identity = 71/200 (35.50%), Postives = 112/200 (56.00%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755 G+K+G+ L K + + V+H+ ++ + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P GGVVF PKPRD+S+ I K KR+ +++E + + PKTKE ++ + + +K + E ++N+ KS+RNI + +L +N++DIL + ++T V + Y Sbjct: 11 GQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFN---AKKTLIVTEESNKNIYKSARNIEGVTVLPVNNINVYDILRYDKFIITKDAVSKIEEVY 205
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_THEM4 (50S ribosomal protein L4 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplD PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.970e-29 Identity = 85/210 (40.48%), Postives = 116/210 (55.24%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS--ENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVLTPSTV 734 + + GE IG L + A + + V+ R + + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P GGV GPKPR + ++NKK KRL N +VV+ D KFE+P+TK+ E ++ GL+ ++ L + S ENV+ S RNI +K+L LN++DIL+ + LVL TV Sbjct: 6 LFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD--DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVLIADNPGVDRVNIDGLNVYDILNHDKLVLLQGTV 213
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_SYNAS (50S ribosomal protein L4 OS=Syntrophus aciditrophicus (strain SB) GN=rplD PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.970e-29 Identity = 74/203 (36.45%), Postives = 116/203 (57.14%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNG 749 + K+ E L+ + AV++ + M ++R GTA+T R +V GGG+KP+ QK TGRAR G++R+P+ GGG+VFGP PRD+ + KK ++ + +V+++F + KTK+F E + R+GL +KA F+ E +E +EKSSRNI +KM+ LN++D+L+ E LV+ V L G Sbjct: 16 VFDINKNKVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGGGKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQGQKLVVLKDF--PLDEIKTKKFKEVVDRFGL---KKALFVTEERNEFLEKSSRNIAGIKMVRSEGLNVYDVLNHEHLVIIEPAVKKLEG 213
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_GEOSW (50S ribosomal protein L4 OS=Geobacillus sp. (strain WCH70) GN=rplD PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.970e-29 Identity = 75/195 (38.46%), Postives = 111/195 (56.92%), Query Frame = 3 Query: 153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737 +GE IGE L+ + + V+ A+I + R+GT T R EV GGGRKP+ QK TGRAR+GS R P GGG VFGP PR +S K+ KK +RL N +V++ E PKTKE ++ + +D +KA + +V+ENV S+RNI + ++T +N+ D+L+ + LV+T + V+ Sbjct: 10 SGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNIVVLDNL--TLEAPKTKEMVKILNNLSVD--RKALIVTDDVNENVTLSARNIPGVTVVTANGINVLDVLNHDKLVITKAAVE 200
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CLOPS (50S ribosomal protein L4 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplD PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 5.185e-29 Identity = 71/200 (35.50%), Postives = 118/200 (59.00%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755 G+++G+ L+ + + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GGVVF PKPRD+ + I K +++ + +V+E+ + FE PKTKE ++ + + +K + EV+ENV KS+RNI + ++ +N++D+L+ +TL++T V+ + Y Sbjct: 11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLEDLN--FEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIEGVTVMPVNNINVYDLLNCKTLMITKEAVNKIEEVY 203
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_THEAB (50S ribosomal protein L4 OS=Thermosipho africanus (strain TCF52B) GN=rplD PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 6.772e-29 Identity = 88/205 (42.93%), Postives = 115/205 (56.10%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE--NVEKSSRNIGTLKML------TPRT----LNLFDILDAETLVLTPSTV 734 GE IG L + A + V+ R + + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P GGV GPKPR + ++NKK KRL N IVV+E KF+RPKTK+ E ++ GL+ ++ L +V E NV+ S RNI +K++ RT LN++DIL+ + LVL TV Sbjct: 11 GENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKEGNLIVVDEI--KFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYVNVKISGRNIPGVKVIIADNPGVDRTNIDGLNVYDILNHDKLVLLQGTV 213 The following BLAST results are available for this feature:
BLAST of DY270912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY270912 ID=DY270912; Name=DY270912; organism=Citrus clementina; type=EST; length=1171bpback to top |