DY270912

Overview
NameDY270912
Unique NameDY270912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1171
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_LYSSC (50S ribosomal protein L4 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplD PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.772e-29
Identity = 75/199 (37.69%), Postives = 112/199 (56.28%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737
            +LS TG  +GE  L+      +   AV+  A++    + R+G      R EV GGGRKP+ QK TGRAR+GS R+P   GGG+VFGP PR +S K+ KK +RL            +N +V++        PKTKEF + ++   L+  +K+ F+  ++ ENV  S+RNI  + +LT   +N+ D+L  E +V T S V+
Sbjct:    6 VLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDAL--TLAAPKTKEFTKILKDLSLE--KKSLFVTADLDENVALSARNIPGVTVLTANGINVLDLLGHEKVVFTKSAVE 200          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_ALKMQ (50S ribosomal protein L4 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplD PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.772e-29
Identity = 72/199 (36.18%), Postives = 111/199 (55.78%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737
            + + +G+K+ E  L       +    V++ A+   + NKR+GT S  TR EVRGGGRKP+ QK TGRAR G+ R+PL  GGG VF PKPRD S  + +K KRL            E  +V++E     + PKTK+ +  ++   L+  +K   +V E +E + KS+ NI  +      T+N++DIL+ +  ++T   V+
Sbjct:    6 VYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGGGRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNNEELLVLDEL--SLDTPKTKDMVNILK--NLNADKKVLLVVGEKNEAIIKSASNIPGVTTALVNTINVYDILNHDKFIITKDAVE 200          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_THEMA (50S ribosomal protein L4 OS=Thermotoga maritima GN=rplD PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 8.844e-29
Identity = 88/227 (38.77%), Postives = 117/227 (51.54%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE----NVEKSSRNIGTLKMLTPRT---------------LNLFDILDAETLVLTPSTVDFLNGRYGVE 764
            +L+  GEK+G   +       D    V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GGVV GPKPRDWS K+NKK K+L               +V++  D K ERPKTK   E ++   L    K T +V+   E    NV+ S RN+  +K++                   LN+FD+L  + LVLT   V  +    G E
Sbjct:    6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLD--DLKLERPKTKSLKEILQ--NLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLGNE 228          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CLOPE (50S ribosomal protein L4 OS=Clostridium perfringens GN=rplD PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 8.844e-29
Identity = 72/200 (36.00%), Postives = 117/200 (58.50%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755
            G+++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E  D  FE PKTKE ++ +  +     +K   +  EV+ENV KS+RNI  + ++    +N++D+L+ +TL++T   V+ +   Y
Sbjct:   11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIRGVTVMPVNNINVYDLLNCKTLMITKEAVNKIEEVY 203          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CLOP1 (50S ribosomal protein L4 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.844e-29
Identity = 72/200 (36.00%), Postives = 117/200 (58.50%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755
            G+++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E  D  FE PKTKE ++ +  +     +K   +  EV+ENV KS+RNI  + ++    +N++D+L+ +TL++T   V+ +   Y
Sbjct:   11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIEGVTVMPVNNINVYDLLNCKTLMITKEAVNKIEEVY 203          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_BACWK (50S ribosomal protein L4 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplD PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.844e-29
Identity = 73/195 (37.44%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S+RNI  + ++T   +N+ D+L  + L++T + V+
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMVAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHDKLIMTKAAVE 200          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_DESPS (50S ribosomal protein L4 OS=Desulfotalea psychrophila GN=rplD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.155e-28
Identity = 78/211 (36.97%), Postives = 114/211 (54.03%), Query Frame = 3
Query:  120 QLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGR 752
            ++ S + +++   EK+ E  L+      +    ++H  +      KR GTAST TR EVRGGG KP+ QK TGRAR GS  +PL  GGGV FGPKPRD+S K+N+K ++              N IV++ F    +  KTKEF   M+   L     A  ++ + SEN+ KS RN+   ++L    LN++DIL  + +VL    ++ L  R
Sbjct:    3 RIMSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNLIVLDNF--IMDAIKTKEFASTMKTLEL---ANALIVMDDASENLSKSCRNVHGYRILPAEGLNVYDILLHKKVVLVKPVIESLEKR 208          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_BACHK (50S ribosomal protein L4 OS=Bacillus thuringiensis subsp. konkukian GN=rplD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.155e-28
Identity = 73/195 (37.44%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S+RNI  + ++T   +N+ D+L  + L++T + V+
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHDKLIMTKAAVE 200          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_BACCZ (50S ribosomal protein L4 OS=Bacillus cereus (strain ZK / E33L) GN=rplD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.155e-28
Identity = 73/195 (37.44%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S+RNI  + ++T   +N+ D+L  + L++T + V+
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHDKLIMTKAAVE 200          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_BACCR (50S ribosomal protein L4 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.155e-28
Identity = 73/195 (37.44%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVD 737
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S+RNI  + ++T   +N+ D+L  + L++T + V+
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHDKLIMTKAAVE 200          
The following BLAST results are available for this feature:
BLAST of DY270912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_LYSSC6.772e-2937.6950S ribosomal protein L4 OS=Lysinibacillus sphaeri... [more]
RL4_ALKMQ6.772e-2936.1850S ribosomal protein L4 OS=Alkaliphilus metallire... [more]
RL4_THEMA8.844e-2938.7750S ribosomal protein L4 OS=Thermotoga maritima GN... [more]
RL4_CLOPE8.844e-2936.0050S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_CLOP18.844e-2936.0050S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_BACWK8.844e-2937.4450S ribosomal protein L4 OS=Bacillus weihenstephan... [more]
RL4_DESPS1.155e-2836.9750S ribosomal protein L4 OS=Desulfotalea psychroph... [more]
RL4_BACHK1.155e-2837.4450S ribosomal protein L4 OS=Bacillus thuringiensis... [more]
RL4_BACCZ1.155e-2837.4450S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACCR1.155e-2837.4450S ribosomal protein L4 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270912 ID=DY270912; Name=DY270912; organism=Citrus clementina; type=EST; length=1171bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAACTGTTGATTTCCTGAATGGCA
GGTATGGGGTCGAGTTCAAGGGAGATGGCGATGAAGAAGAAGAAAAGAAG
TGAACCAGGGGAGCAGGGGAGGAAAGTGGATGCACCAAAAAATGGATTCA
AAGTCTGGGGGCAGTTTTCCCCTTGAATGCCCAAGGGATCCATTTATTGG
CGACACATTTGAATTTAAAGAATTTTTTTTTTTCTTTATATTGCCTAAAC
CAAAAAATTGTGTTAATGGGTGGCGGCGGGAACCTCGATCCAACCCAAAA
TTTTGGGGTAAAATTAATAAGTGGAAAACTTTTTTGGGAATTTTTGGAAA
CTGTGCCCCTCCCAAGGGAAAAAAAAAAAATTGTAAGGAAGTTTTTGTTT
ATTCTATCCCCCCTTTTTGTCAAAATGTTTTATGTGTGCGCATTCTTTTG
GGGGGGGGTTAATAGTTTTTC
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