DY270919

Overview
NameDY270919
Unique NameDY270919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length985
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270919 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.276e-14
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    5 MGRCRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 226
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DY270919 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.276e-14
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    5 MGRCRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 226
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DY270919 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.276e-14
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    5 MGRCRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 226
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DY270919 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.276e-14
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    5 MGRCRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 226
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DY270919 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.667e-14
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 2
Query:    5 MGRCRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 214
            MGR ++ +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of DY270919 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.850e-14
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 2
Query:    5 MGRCRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 271
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of DY270919 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.843e-13
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 2
Query:    5 MGRCRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 271
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
The following BLAST results are available for this feature:
BLAST of DY270919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2A_XENLA1.276e-1454.05Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB1.276e-1454.05Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE1.276e-1454.05Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK1.276e-1454.05Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
SRFC_DICDI1.667e-1454.29Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN4.850e-1446.07Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE1.843e-1344.94Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270919 ID=DY270919; Name=DY270919; organism=Citrus clementina; type=EST; length=985bp
GAAAATGGGAAGGTGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCA
ACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCT
TATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTC
CAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAA
CGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTG
TCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCT
TAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAG
AAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAG
CTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCT
GGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAA
ATAAGACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTT
CAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCA
ACCTCAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGC
AAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCG
AGTCTGATTAATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGG
GCATTACCAGTCCATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTG
TATCCCTTTTGTAGCCAACCCTATTCAGGGAACAGGAACCCCCCAACCTA
AAGGATTTATTATAATAACTCTAACGGTGATCCTGCACTTTAGGAAAATG
AATGACAAAAAAAGCCTATGTTGGGGGGGGCGTGGATTTTCCACCCCCGC
CCCTTTTCCTTATTTTTAAAAAAAACCCTTGTTTT
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