DY270971

Overview
NameDY270971
Unique NameDY270971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1025
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270971 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.239e-12
Identity = 51/202 (25.25%), Postives = 86/202 (42.57%), Query Frame = 3
Query:  162 SWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPE-VGDLPYLETL-----MFHKLPS-----------------LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLE 698
            ++N     C W  + CD     +  L      L GQIP   +G L  L++L         LPS                 ++G     +     L+ L IS+ N SG +P+ +  L +L  L+L  N    +IP  L   Q L ++ L  N+L GS+P+ FG+    +  L L+ N++ G+          + +++S N+ +
Sbjct:   47 AYNFSAPFCSWQGLFCDSKNEHVIMLIASGMSLSGQIPDNTIGKLSKLQSLDLSNNKISALPSDFWSLNTLKNLNLSFNKISGSFSSNVGNFGQLELLDISYNNFSGAIPEAVDSLVSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSNQLEGSLPDGFGSAFPKLETLSLAGNKIHGRDTDFADMKSISFLNISGNQFD 248          
BLAST of DY270971 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.239e-12
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  225 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPE 569
            ++  L I A  L G IP  +  L  L+ L    L     P  P +  +K ++TL +   N++G +PD++ ++T+  FL+LSFN LSG IP +   L+  G ++   N L GS+P+
Sbjct:  207 KLERLFIQASGLVGPIPIAIASLVELKDLRISDLNGPESPF-PQLRNIKKMETLILRNCNLTGDLPDYLGKITSFKFLDLSFNKLSGAIPNTYINLRDGGYIYFTGNMLNGSVPD 320          

HSP 2 Score: 71.633 bits (174), Expect = 8.149e-12
Identity = 51/158 (32.28%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  228 INSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL-DRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKL 695
            + SL + A  L G++P E+G+LP ++ ++     +  G I    AKL  L+  R+S   +SG +PDFI + T L  L +  + L G IP +++ L +L  L + D N      P+        +  L L +  L+G +P  LG +  F  +DLS NKL
Sbjct:  136 LTSLVLEANQLSGELPLELGNLPNIQQMILSS-NNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLERLFIQASGLVGPIPIAIASLVELKDLRISDLNGPESPFPQLRN--IKKMETLILRNCNLTGDLPDYLGKITSFKFLDLSFNKL 290          

HSP 3 Score: 69.3218 bits (168), Expect = 4.044e-11
Identity = 43/134 (32.09%), Postives = 69/134 (51.49%), Query Frame = 3
Query:  258 LPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM 659
            L G IPPE G LP +   +      LTGPI      +  L +L +    +SG +P  +  L N+  + LS NN +G IP + +KL  L    +  N+L+G+IP+    +T  +  L++  + L G IP ++ S+
Sbjct:   99 LNGSIPPEWGVLPLVNIWLLGN--RLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWT-KLERLFIQASGLVGPIPIAIASL 229          
BLAST of DY270971 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.239e-12
Identity = 59/210 (28.10%), Postives = 98/210 (46.67%), Query Frame = 3
Query:   96 NPNDKKVLLKFKKSLNNPYVLASW-NPKTDCC--DWYCVTCD---LTTNRINSLTI------FAGDLPGQIPPEVGDLPYLETLMFHKLPSLT----------GPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM 659
            +P+D + L     SLN+P  L +W N   D C   W  +TC+   + T  I+ L +         DL      +V      +TL +   P+LT          G +  +I+ + +L  + +S  +++  + D  +   +L  L+LS NN SG +P SLS +  L  L++  N+LTGSI    G     +  L +++N  +G IP  L S+
Sbjct:   30 DPSDVQALQVLYTSLNSPSQLTNWKNGGGDPCGESWKGITCEGSAVVTIDISDLGVSGTLGYLLSDLKSLRKLDVSGNSIHDTLPYQLPPNLTSLNLARNNLSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNFSGDLPSSLSTVSTLSVLYVQNNQLTGSIDVLSGL---PLKTLNVANNHFNGSIPKELSSI 236          
BLAST of DY270971 vs. ExPASy Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.064e-11
Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = 3
Query:  102 NDKKVLLKFKKSLNNPYVLASWNPKTD-CCDWYCVTCDLTTNRINSLTI----FAGDLP---------------------GQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGS 593
            +DK+ LL+F   + +   L +WN     C  W  +TC     R+ +L +      G LP                     G IP  +  LP++ +L FH+  + +G I P ++    L  L +S  ++SG +P  +  LT LT L L  N+LSG IP    +L+    L+L  N L GS+P S  +F  S
Sbjct:   27 SDKQALLEFASLVPHSRKL-NWNSTIPICASWTGITCSKNNARVTALRLPGSGLYGPLPEKTFEKLDALRIISLRSNHLQGNIPSVILSLPFIRSLYFHE-NNFSGTIPPVLSH--RLVNLDLSANSLSGNIPTSLQNLTQLTDLSLQNNSLSGPIPNLPPRLK---YLNLSFNNLNGSVPSSVKSFPAS 209          
BLAST of DY270971 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 1.815e-11
Identity = 58/205 (28.29%), Postives = 96/205 (46.83%), Query Frame = 3
Query:   93 CNPNDKKVLLKFKKSLN-NPYVLASWNPKTDCCDWYCVTCDLT-TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSL-SKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMD-FNTIDLSRNKL 695
            C+P+D + L  F   L   P    + +  TDCC+W  +TC+   T R+  L +    L G++   +G L  +  L   +   +   I  +I  LKNL+TL +S  ++SG +P  I+ L  L   +LS N  +G++P  +     ++  + L  N   G+    FG     +  L L  N L+G IP  L  +   N + +  N+L
Sbjct:   31 CHPHDLEALRDFIAHLEPKPDGWINSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSR-NFIKDSIPLSIFNLKNLQTLDLSSNDLSGGIPTSIN-LPALQSFDLSSNKFNGSLPSHICHNSTQIRVVKLAVNYFAGNFTSGFGKCV-LLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRL 232          
BLAST of DY270971 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.009e-11
Identity = 60/215 (27.91%), Postives = 99/215 (46.05%), Query Frame = 3
Query:   96 NPNDKKVLLKFKKSLNNPYVLASWNPKT-DCCD--WYCVTCDLTT----------------------NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIP--DLYLSHNQLSGKIPASLGSM 659
            +P +   L    KSL NP  L  W  +  D C   W  ++C  ++                      + +  L +   +L G+IP     LP   T +     +LT  I  ++  + +L++L +S  ++SGP+ +  S L  +  ++LSFNNL+G +P S   L  L +L+L  N+LTGS+      +   +P  DL +  NQ SG IP+   S+
Sbjct:   28 DPLEVLALQDLYKSLRNPEQLRGWRLEGGDPCGEAWLGISCSGSSIVDLQLRELKLLGSLGNQLQHLHNLKILDVSFNNLEGEIP---FGLPPNATHINMAYNNLTQSIPFSLPLMTSLQSLNLSHNSLSGPLGNVFSGL-QIKEMDLSFNNLTGDLPSSFGTLMNLTSLYLQNNRLTGSV-----IYLADLPLADLNIEDNQFSGIIPSHFQSI 233          
The following BLAST results are available for this feature:
BLAST of DY270971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
Y2242_ARATH6.239e-1225.25Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH6.239e-1233.91Probable LRR receptor-like serine/threonine-protei... [more]
SRF8_ARATH6.239e-1228.10Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
Y3868_ARATH1.064e-1130.00Probable inactive receptor kinase At3g08680 OS=Ara... [more]
PSKR1_ARATH1.815e-1128.29Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
SRF2_ARATH9.009e-1127.91Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270971 ID=DY270971; Name=DY270971; organism=Citrus clementina; type=EST; length=1025bp
GCTTCACTACTCTTCAAAAAATGAGCAACACGTCACTGTTGTCTCTCTTC
TTCTTCTTGTCCCTTTGCATTTCCCCTTCACTCTCAGACCTCTGCAACCC
AAATGACAAGAAAGTGCTTCTCAAATTCAAAAAATCTTTGAACAACCCTT
ACGTTCTAGCTTCTTGGAACCCAAAAACTGACTGCTGTGACTGGTACTGC
GTCACATGCGATCTCACCACTAACCGCATCAATTCTCTCACCATCTTCGC
CGGAGATCTCCCCGGCCAGATCCCCCCCGAAGTTGGTGATCTTCCTTACC
TCGAAACCCTAATGTTTCACAAGCTACCCAGCCTCACTGGCCCCATACAA
CCCGCCATTGCCAAGCTCAAAAACCTGAAGACGCTACGTATTAGCTGGAC
TAACATTTCTGGGCCGGTTCCTGATTTTATCAGCCAACTCACCAACTTAA
CATTCTTGGAGCTTTCATTTAACAATCTTTCTGGGACGATCCCAGGTTCA
CTTTCGAAGCTGCAGAAGCTTGGCGCTCTTCATTTGGACAGAAACAAGCT
TACGGGTTCAATCCCGGAGTCTTTTGGTACATTCACCGGGAGTATACCCG
ATCTTTACTTGTCACATAACCAGCTCTCTGGCAAAATCCCTGCCTCTTTA
GGCAGCATGGATTTTAACACCATTGACTTGTCCAGGAACAAGCTTGAAAG
CGAATGCCTCGTTCTTGTTCGGGTTGAACAAAAACAACCCAAAAAATGAA
GGTTCCAAAAACCTTGTTGGAATTTAACCTGTCCAAGGTTGAATTTCCAA
AAAGCCTGAAAAATTTGGAATTGAATCCAAAACAAAATATTCCGGAACAT
TCCGGCCCAAATACCTTCCCAAAAAAACCAAGAAATCCTTGAAAGCTCAA
TTCAAAAAGTTTTTTGGGAGCCAAATCCCCTGGGGGGAAAATTTCCAAAA
CTTTTGAAATACCCGGGAATATTTTTTTAAATAACGTTCTTTGGTTGGCC
GCGCCCCCTTCAAAACCCGCAAAAT
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