DY270980

Overview
NameDY270980
Unique NameDY270980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1313
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.378e-33
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 406
            +   GDG   T ITGN +  DG  T  +AT+++ GE F+A++I   N+AGPEKHQAVALRV+AD    Y C +DGYQDTLYTH+ RQ+YR+C I GTID+IFG+ +  FQ C I+ + P+     ++TA  R+
Sbjct:  288 IVLIGDGSDVTFITGNRSVGDGWTTFRSATLAVSGEGFLARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYRECDIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRD 420          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 9.037e-33
Identity = 66/132 (50.00%), Postives = 88/132 (66.67%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 403
            + F GDG  KT I+G  +  D   T HTA+ +  G  F+A++I FEN AGP KHQAVALR+ AD ++ Y C++ GYQDTLY H+ RQ++R+C I GT+DFIFG+ +   QNC I  RKP+D     +TA  R
Sbjct:  336 LMFVGDGKGKTVISGGKSIFDNITTFHTASFAATGAGFIARDITFENWAGPAKHQAVALRIGADHAVIYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMDFQKNTITAQNR 467          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.180e-32
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 2
Query:   20 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 403
            GDGM  T ITG+LN VDG+ T  + T++ +G+ F+ ++I  +N+AGPEK QAVALRV ADMS+   C +D YQDTLY H++RQ+YRD  +TGT+DFIFG+ +  FQ C I+ RKP      +VTA GR
Sbjct:  287 GDGMNATIITGSLNVVDGS-TFPSNTLAAVGQGFILQDICIQNTAGPEKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGR 413          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 7.650e-32
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 406
            V   GDG+ KT ITG+ +   GT T ++ATV+ +G+ F+A+ I F N+AG    QAVALR  +D+S+FY CS + YQDTLY H+ RQ+YRDC + GT+DFIFG+ +A  QNC I  R+P    + I TA GR+
Sbjct:  253 VMLRGDGIGKTIITGSKSVGGGTTTFNSATVAAVGDGFIARGITFRNTAGASNEQAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPRSKTNTI-TAQGRS 384          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.704e-31
Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 403
            V   GDG+ +T ITGN + VDG  T ++AT  + G  F+  NI   N+AGP K QAVALR   D+S+FY+CS + YQDTLYTH+ RQ+YR+C + GT+DFIFG+ +   QNC +  R+P       VTA GR
Sbjct:  299 VMMIGDGINQTVITGNRSVVDGWTTFNSATFILSGPNFIGVNITIRNTAGPTKGQAVALRSGGDLSVFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQSNEVTAQGR 430          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.797e-31
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 403
            + F GDG  KT ITG  +  D   T HTAT +  G  F+ +++ FEN AGP KHQAVALRV  D ++ Y C++ GYQD LY H+ RQ++R+C I GT+DFIFG+ +   Q+C I  RKP+      +TA  R
Sbjct:  325 LMFIGDGKGKTVITGGKSIADDLTTFHTATFAATGAGFIVRDMTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNR 456          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 67/128 (52.34%), Postives = 87/128 (67.97%), Query Frame = 2
Query:   20 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 403
            GDG   T ++G+LN VDG  T  +AT+++    FMA+++   N+AGPEK QAVALR+  DM+I Y C +D YQDTLY ++ RQ+YRDC ITGT+DFIFG  +A FQ C I  RKP      I+TA  R
Sbjct:  100 GDGRDLTVLSGDLNGVDGIKTFDSATLAVDESGFMAQDLCIRNTAGPEKRQAVALRISTDMTIIYRCRIDAYQDTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSR 227          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.884e-30
Identity = 63/132 (47.73%), Postives = 89/132 (67.42%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 403
            + F GDG   T IT + N  DG+ T ++ATV+ +G  F+A++I F+N+AG  KHQAVALRV +D+S FY C +  YQD+LY H+ RQ++ +C I GT+DFIFG+ +   Q+C I  R+P      +VTA GR
Sbjct:   59 IMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGR 190          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.884e-30
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNY-VDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVR----KPLDNHHCIVTAHGR 403
            V F GDGM KT ITG+LN  + G  T +TATV ++G+ FMA+++ F+N+AGP+ HQAVA R D+D S+  NC   G QDTLY H  RQ+Y++C I G +DFIFG+ +A FQ+C I++      P       VTA GR
Sbjct:  292 VVFIGDGMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDLTFQNTAGPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPRQINPEKGEKNAVTAQGR 428          
BLAST of DY270980 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.482e-30
Identity = 63/132 (47.73%), Postives = 91/132 (68.94%), Query Frame = 2
Query:    8 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 403
            +   GDG  KT IT   +   G  T ++AT    G+ F+AK++ F N+AGP + QAVA+R  +D+S+FY   + G+QDTLY H++RQ++R+C I+GTIDFIFG+ +  FQNC+I+VR+PL     I+TA GR
Sbjct:  332 IMLVGDGERKTIITSGRSVQHGYTTYNSATGGFGGQRFVAKDMTFINTAGPLRGQAVAVRSSSDLSVFYRVGIHGFQDTLYIHSQRQFFRECYISGTIDFIFGNAAVVFQNCMILVRRPLHGQANIITAQGR 463          
The following BLAST results are available for this feature:
BLAST of DY270980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PME12_ARATH2.378e-3350.38Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME34_ARATH9.037e-3350.00Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_SOLLC1.180e-3253.91Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME17_ARATH7.650e-3250.38Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME20_ARATH1.704e-3150.00Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME61_ARATH3.797e-3147.73Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME56_ARATH1.105e-3052.34Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME_DAUCA1.884e-3047.73Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME51_ARATH1.884e-3049.64Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME33_ARATH5.482e-3047.73Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270980 ID=DY270980; Name=DY270980; organism=Citrus clementina; type=EST; length=1313bp
GGCTCGTGTGTTTTTTTTTGGTGATGGCATGTACAAGACCAGAATCACAG
GAAATTTGAACTATGTCGATGGCACACCCACGATGCATACCGCCACAGTC
AGTATTCTTGGAGAATTCTTCATGGCTAAGAACATTGGCTTTGAGAACTC
AGCAGGACCAGAGAAACATCAAGCAGTAGCCCTAAGGGTGGATGCCGATA
TGTCAATCTTCTACAACTGTTCAATGGACGGCTACCAAGACACACTCTAC
ACCCACGCCAAGCGCCAGTACTACCGAGACTGCACCATCACCGGCACAAT
CGACTTCATCTTCGGCGACTGCTCTGCCTTCTTTCAAAACTGCATAATCA
TCGTCCGAAAACCCCTAGACAACCATCATTGCATTGTCACTGCCCATGGC
CGCAATGTTTACCCACCAGCCGACCACCATCTTCTTCCAGAACAGCTTCA
ATCATCACGGACCACGTGTACTGTCCCGTCAAGAATATTTCAAGACAAAT
CTCGTACGCCCCAGAAATATTTATTCTAAGGACACTCATATGATAGACCT
TAACTGCTATTAGACTTATCTTTTTTGGGTGGTGCTTTTGTGTTCGGACA
CTAAGAGTTCATTGTTAGTGTATATGTTTTTCTCTGTTCCCAAATCTCTC
TATTTTTCATTATCGATAGTGACCCATGTCGTGTAGAATAGACGGACATT
TCTGTCGTATCCTACTTTTTTACGCTTTCCTCGCGAATTCTTTTTTTCTC
ATCTCTCAAGTACCTACTCCACTTAAGAACATCGAAGGGTTAATAGTTTG
AGGAAGATCTCTTTGTGTTCATTAAACTCACACGCGTTACTCCACATGTT
GACATCAAATATTTTTATTTTTTTAAAGATTCACTTACAGCTATGTCTAG
TGAGACTAATAAGGTCGAAAATAGGGTAAAGCAGCACGATTAAAAATCTC
CACACTACCTATTGTCAATCAATGTACATCACCACTTTATTATTTCCACC
TTACTGTTTCTTTCCTGATATCCTTTTATTTATGTCTGTATCTAGTTTTA
ATACATCGACCTCAACTTGTTATCTCGTTTGCTTTTTGATTGTTTTATTC
TATTTTCGTTAGTCGATATGCGTTCAGATTCATAATCTCAACCTGCATAA
TTCTACTTTCTAAGGATTCCTGTATACTTATTTATCAATAGTTAATAAAC
CTAATATCAATCACCTACACTGCTCTATTACTTTATTATACAATTATTAT
CACTTACTTATATTATCATCTTTTCACCTCCTAGAATTCTTCTTATAATG
TACTATTCATTAA
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