DY270986

Overview
NameDY270986
Unique NameDY270986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_ECOSM (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.931e-19
Identity = 74/258 (28.68%), Postives = 119/258 (46.12%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEG 764
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+     KT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L   +++  G L  A     + +    KT  N P  +  L V+E G
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPQSILLEA----AVELAKQDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETG 257          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_ESCF3 (Fatty acid oxidation complex subunit alpha OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.144e-18
Identity = 74/254 (29.13%), Postives = 117/254 (46.06%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGA------------------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEG 764
            T+ V  D +A++T+  P   +N L     A ++   +E     +++ +V ++     F  G DIN+    + A                      P+                + CH RI    PKT LGLPE+ LG++PG GGTQRLPRLVGLS A++M+L  K +   +  K GL+D +V    LL+     A++ A + +   RSL   +++  G L  +     +++   +KT  N P     L+VIE G
Sbjct:    8 TLNVRLDHIAVVTIDVPGEKMNTLKAEFAAQVRAILKEIRENKEIRGVVFISAKADNFIAGADINMIDHCNTAMEAETLARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRICTDDPKTILGLPEVQLGLLPGSGGTQRLPRLVGLSTALDMILTGKQLRPGQALKSGLVDEIVPQSILLQA----AVERAKQERQTPRSLPVRERILAGPLGRSLLFRFVSKKTDQKTQGNYPATTRILDVIETG 257          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SHIDS (Fatty acid oxidation complex subunit alpha OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadJ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.951e-18
Identity = 73/258 (28.29%), Postives = 118/258 (45.74%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEG 764
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT L LPE+ LG++PG  GTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L   +++  G L  A     + +    KT  N P  +  L V+E G
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQDQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLSLPEVQLGLLPGSDGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETG 257          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.548e-18
Identity = 75/264 (28.41%), Postives = 122/264 (46.21%), Query Frame = 3
Query:   93 NDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGA-DCKK-----------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DKLGSLSEAREVL--KLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKG 800
            +DG+AI+T+  P   +N L       + D   E  +   +K +VL +G    F  G DI++      A D K+                 P+                + CH R+ +  PKT +G+PE+ LG++PG GGTQRLPRLVG++ A++MML  K +  ++  K+GL+D  V    LL+     A+++A   K   +  H++     L   S  R ++  +  +  AKKT  N P     ++ + +G       G+ KG
Sbjct:   13 DDGIAILTMDVPGETMNTLRSEFGPEISDVLAEIKADTSIKGLVLVSGKKDSFVAGADISMLDACETATDAKQLSQQGHVVFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGLLPGGGGTQRLPRLVGVTTALDMMLTGKQLRPKQALKMGLVDDAVPESILLRT----AVEMALAGKRPAKKKHQSFFNKVLEGTSAGRNIIFDQAGKQVAKKTQGNYPAPAKIIDCVRQGMT----KGMAKG 268          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_YERPS (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadJ PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.328e-18
Identity = 77/265 (29.06%), Postives = 119/265 (44.91%), Query Frame = 3
Query:   69 PRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNG 788
            P  T+ V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A   +                  P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW   L      G L +A     + +    KT  + P  +  ++V+ +G    G +G
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPWQERL----LSGPLGKALLFRIVRKKTLAKTRGHYPAAERIIDVVRKGLDQGGPSG 272          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadJ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.328e-18
Identity = 77/265 (29.06%), Postives = 119/265 (44.91%), Query Frame = 3
Query:   69 PRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNG 788
            P  T+ V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A   +                  P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW   L      G L +A     + +    KT  + P  +  ++V+ +G    G +G
Sbjct:   39 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPWQERL----LSGPLGKALLFRIVRKKTLAKTRGHYPAAERIIDVVRKGLDQGGPSG 299          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.328e-18
Identity = 77/265 (29.06%), Postives = 119/265 (44.91%), Query Frame = 3
Query:   69 PRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNG 788
            P  T+ V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A   +                  P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW   L      G L +A     + +    KT  + P  +  ++V+ +G    G +G
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPWQERL----LSGPLGKALLFRIVRKKTLAKTRGHYPAAERIIDVVRKGLDQGGPSG 272          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadJ PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.328e-18
Identity = 77/265 (29.06%), Postives = 119/265 (44.91%), Query Frame = 3
Query:   69 PRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNG 788
            P  T+ V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A   +                  P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW   L      G L +A     + +    KT  + P  +  ++V+ +G    G +G
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPWQERL----LSGPLGKALLFRIVRKKTLAKTRGHYPAAERIIDVVRKGLDQGGPSG 272          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.328e-18
Identity = 77/265 (29.06%), Postives = 119/265 (44.91%), Query Frame = 3
Query:   69 PRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNG 788
            P  T+ V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A   +                  P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW   L      G L +A     + +    KT  + P  +  ++V+ +G    G +G
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPWQERL----LSGPLGKALLFRIVRKKTLAKTRGHYPAAERIIDVVRKGLDQGGPSG 272          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadJ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.328e-18
Identity = 77/265 (29.06%), Postives = 119/265 (44.91%), Query Frame = 3
Query:   69 PRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNG 788
            P  T+ V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A   +                  P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW   L      G L +A     + +    KT  + P  +  ++V+ +G    G +G
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPWQERL----LSGPLGKALLFRIVRKKTLAKTRGHYPAAERIIDVVRKGLDQGGPSG 272          
The following BLAST results are available for this feature:
BLAST of DY270986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
FADJ_ECOSM3.931e-1928.68Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ESCF31.144e-1829.13Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHIDS1.951e-1828.29Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHEHH2.548e-1828.41Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_YERPS3.328e-1829.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPP3.328e-1829.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPN3.328e-1829.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPE3.328e-1829.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPA3.328e-1829.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERP33.328e-1829.06Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270986 ID=DY270986; Name=DY270986; organism=Citrus clementina; type=EST; length=1215bp
TTCGGATTGATATTTAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAAGAGAGGTGTTGAAACTTGCTAGACTACA
AGCCAAGAAGACTGCCCCAAATATGCCTCACCACAAGCATGGCCTGAATG
TGATTGAGGAGGGTACCGTTCATGAAGGATATAATGGCGTTTTGAAAGGA
GGCCCAAGTTTTCAGGGAGTTAGTCAAGGTTAAACCCCTTCCAAAAGGTC
TTGTTCTGTCCTTTTTCGCCCAACCCGGAAACCTCCAAGGGTGCCCCATA
TGTAAACTGAAAATTGGTCTCCCAAACCAATGGGGTGTAAAAAAAAACTT
GCCTGGGACTTAAGGCCGCGTCCTAGGGGGTTCTGGGCCATACCATTTCC
GCACCAAACCTTGACAATAATCTAATGTTTTCTCCTAATGGTAATTTTTT
CTTTAATAAATCTTTCTACCAATGAGTAAAACAAAATTAAAGCACATCAA
CAGTTTCCCGAGCCCTTGTCTACACCAATAACAAAATCATCAAACCGCAT
CTAAATACCTAACAACCAATCCCTCACCATATAATATTTTTTAAACAACT
GAGACTACCATCTAT
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