DY270986

Overview
NameDY270986
Unique NameDY270986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SALDC (Fatty acid oxidation complex subunit alpha OS=Salmonella dublin (strain CT_02021853) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.265e-17
Identity = 77/287 (26.83%), Postives = 128/287 (44.60%), Query Frame = 3
Query:   81 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKGGPSFQGVSQG*TPSKRSCSVLF 866
            + V  D VA++ +  P   VN L     A ++   ++      ++ +V ++     F  G DIN+      A   +                  P+                + CH RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A++M+L  K + + +  K GL+D VV    LL+     A+++A + +   R+L   +++  G L  A     + +  A+KT  N P  +  ++VIE G      +G      +F  ++   TP  ++   +F
Sbjct:    9 LNVRLDNVAVVAIDVPGEKVNTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEA----AVELAKKERLAQRTLPVRERILAGPLGRALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGELAM--TPQSQALRAVF 289          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SALA4 (Fatty acid oxidation complex subunit alpha OS=Salmonella agona (strain SL483) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.265e-17
Identity = 77/287 (26.83%), Postives = 128/287 (44.60%), Query Frame = 3
Query:   81 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKGGPSFQGVSQG*TPSKRSCSVLF 866
            + V  D VA++ +  P   VN L     A ++   ++      ++ +V ++     F  G DIN+      A   +                  P+                + CH RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A++M+L  K + + +  K GL+D VV    LL+     A+++A + +   R+L   +++  G L  A     + +  A+KT  N P  +  ++VIE G      +G      +F  ++   TP  ++   +F
Sbjct:    9 LNVRLDNVAVVAIDVPGEKVNTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEA----AVELAKKERLAQRTLPVRERILAGPLGRALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGELAM--TPQSQALRAVF 289          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SALSV (Fatty acid oxidation complex subunit alpha OS=Salmonella schwarzengrund (strain CVM19633) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.157e-17
Identity = 76/287 (26.48%), Postives = 128/287 (44.60%), Query Frame = 3
Query:   81 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKGGPSFQGVSQG*TPSKRSCSVLF 866
            + V  D VA++ +  P   VN L     A ++   ++      ++ +V ++     F  G DIN+      A   +                  P+                + CH RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A++M+L  K + + +  + GL+D VV    LL+     A+++A + +   R+L   +++  G L  A     + +  A+KT  N P  +  ++VIE G      +G      +F  ++   TP  ++   +F
Sbjct:    9 LNVRLDNVAVVAIDVPGEKVNTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALRAGLVDDVVPQTILLEA----AVELAKKERLAQRTLPVRERILAGPLGRALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGELAM--TPQSQALRAIF 289          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.157e-17
Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  354 MGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKGGPSFQGVSQG*TPSKRSCSVLFRPT 875
            + CH+RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A+EM+L  K +   +  K GL+D VV    LL+     A ++A +R+P  R L   ++L  G +  A     + +   +KT  N P  +  ++V+  G      +G      +F  ++   TP   +   LF  T
Sbjct:  121 LACHSRICTDDVKTLLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILAGKQLRPRQALKAGLVDDVVPQSILLEA----AAELAKKRRPAPRRLPVRERLLAGPIGRALLFRMVTQKTHQKTHGNYPAAQRIIDVVRTGLEQGSASGYQAEARAFGELAM--TPESAALRGLFFAT 292          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SHESW (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.817e-17
Identity = 73/249 (29.32%), Postives = 114/249 (45.78%), Query Frame = 3
Query:   93 NDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKTAPNMPHHKHGLNVIEEG 764
            +DG+AI+T+  P   +N L       + +   E  S   ++ +VL +G    F  G DI++      A   K                  P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I S++  K+GL++ VV    LL+ +   AL      KP  +SL     L   S  R ++  +  +   KKT  N P     ++ + +G
Sbjct:   11 DDGIAILTMDVPGETMNTLKAQFGPEISEILAEIKSDPHIRGLVLISGKKDSFVAGADISMLDACKTAGDAKALSQQGHVVFNELEALKIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRSKQALKMGLVNDVVPQTILLQTAVEMALTGKRAPKPVKKSL-VNQVLEGTSFGRNIIFDQATKQVEKKTQGNYPAPAKIIDCVRQG 258          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SALTY (Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.817e-17
Identity = 60/175 (34.29%), Postives = 95/175 (54.29%), Query Frame = 3
Query:  354 MGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKGGPSFQGVSQG*TPSKRSCSVLF 866
            + CH RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A++M+L  K + + +  K GL+D VV    LL+     A+++A + +   R+L   +++  G L  A     + +  A+KT  N P  +  ++VIE G      +G      +F  ++   TP  ++   +F
Sbjct:  121 LACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEA----AVELAKKERLAQRTLPVRERILAGPLGRALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGELAM--TPQSQALRAIF 289          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SHESR (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.806e-17
Identity = 72/248 (29.03%), Postives = 112/248 (45.16%), Query Frame = 3
Query:   96 DGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKTAPNMPHHKHGLNVIEEG 764
            DG+AI+T+  P   +N L       + +   E      ++ +VL +G    F  G DI++      A   K                  P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV    LL+ +   AL      KP  +SL     L      R ++  + A+  AKKT  N P     ++ + +G
Sbjct:   12 DGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRTAKPVKKSL-VNQLLEGTGFGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQG 258          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SHESM (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.806e-17
Identity = 72/248 (29.03%), Postives = 112/248 (45.16%), Query Frame = 3
Query:   96 DGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKTAPNMPHHKHGLNVIEEG 764
            DG+AI+T+  P   +N L       + +   E      ++ +VL +G    F  G DI++      A   K                  P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV    LL+ +   AL      KP  +SL     L      R ++  + A+  AKKT  N P     ++ + +G
Sbjct:   12 DGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRTAKPVKKSL-VNQLLEGTGFGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQG 258          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: FADJ_SHEFN (Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.806e-17
Identity = 77/263 (29.28%), Postives = 122/263 (46.39%), Query Frame = 3
Query:   93 NDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKA-IVLTGNGGRFSGGFDIN--------------------VFQKVHGADCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL-KLARLQA-KKTAPNMPHHKHGLNVIEEGTVHEGYNGVLKG 800
            +DG+AI+T+  P   +N L       + +   E  +   +K  +V++G    F  G DI                     VF ++ G     P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV +  LL+ +   A       KP ++S      L S S  R+++   AR Q  KKT  N P     ++ + +G       G++KG
Sbjct:   13 DDGIAILTMDVPGETMNTLKEQFGPEISEILTEIKADSSIKGLVVISGKADSFVAGADITMLAACKNEEQAKTLSQQGHVVFAELEGLSI--PVVAAINGACLGGGLELALACHLRVCSDDKKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPNSILLETAVELAKKGKQAAKPVVQS-KINQFLESTSFTRDIIFDQARKQVLKKTQGNYPAPAKIIDCVRQGM----NKGMVKG 268          
BLAST of DY270986 vs. ExPASy Swiss-Prot
Match: ECHM_DICDI (Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.277e-17
Identity = 62/185 (33.51%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  102 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC---------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 608
            V ++TL  P  +NAL+  +++ +    +      DV +I++TG+   F+ G DI   +KV   D                +KPI                M C   IA  K   G PE+ LG IPG GGTQRL R +G SKA+E++L   ++T+ E  K GL+  VV  EELL  +   A  IA+
Sbjct:   34 VGLVTLNRPKSLNALSDGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGADIKEMEKVTLPDAYNNDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAVFGQPEIKLGTIPGCGGTQRLIRAIGKSKAMELVLTGNNLTAVEAEKAGLVSKVVPVEELLTEATKMAEKIAS 218          
The following BLAST results are available for this feature:
BLAST of DY270986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
FADJ_SALDC1.265e-1726.83Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALA41.265e-1726.83Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALSV2.157e-1726.48Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_ENTS82.157e-1734.83Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADJ_SHESW2.817e-1729.32Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SALTY2.817e-1734.29Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SHESR4.806e-1729.03Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHESM4.806e-1729.03Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHEFN4.806e-1729.28Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECHM_DICDI6.277e-1733.51Probable enoyl-CoA hydratase, mitochondrial OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270986 ID=DY270986; Name=DY270986; organism=Citrus clementina; type=EST; length=1215bp
TTCGGATTGATATTTAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAAGAGAGGTGTTGAAACTTGCTAGACTACA
AGCCAAGAAGACTGCCCCAAATATGCCTCACCACAAGCATGGCCTGAATG
TGATTGAGGAGGGTACCGTTCATGAAGGATATAATGGCGTTTTGAAAGGA
GGCCCAAGTTTTCAGGGAGTTAGTCAAGGTTAAACCCCTTCCAAAAGGTC
TTGTTCTGTCCTTTTTCGCCCAACCCGGAAACCTCCAAGGGTGCCCCATA
TGTAAACTGAAAATTGGTCTCCCAAACCAATGGGGTGTAAAAAAAAACTT
GCCTGGGACTTAAGGCCGCGTCCTAGGGGGTTCTGGGCCATACCATTTCC
GCACCAAACCTTGACAATAATCTAATGTTTTCTCCTAATGGTAATTTTTT
CTTTAATAAATCTTTCTACCAATGAGTAAAACAAAATTAAAGCACATCAA
CAGTTTCCCGAGCCCTTGTCTACACCAATAACAAAATCATCAAACCGCAT
CTAAATACCTAACAACCAATCCCTCACCATATAATATTTTTTAAACAACT
GAGACTACCATCTAT
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