DY270990

Overview
NameDY270990
Unique NameDY270990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY270990 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.609e-12
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL-LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKD 413
            +K     L++ S+V+ +  I + IGC M+G IADAR  V  AR E     +  G PM  +   + + ++A       + +  RP GV++ L+A  DE GPSL+  DP+G +    A + G       + L++++ KD
Sbjct:   51 QKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA---QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKD 184
[Close]
BLAST of DY270990 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.155e-12
Identity = 48/182 (26.37%), Postives = 91/182 (50.00%), Query Frame = 3 
Query:   39 SSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYN--KDLTLQEAETIALSILKQVM--EEKVTPNNVDIARVA--PTYHLYTPSEVEAVINRL 566
            S  +K+ EID H G +++GL++D R L  + + E  + R+ Y + + ++   +++    L+     +    RPFGV +LIAG D++G  +  TDPS      +  +IG+ S+ A + L+   +  +  T ++    AL  L+  +  EE +   N  I  V     + L   ++V   +N++
Sbjct:   58 SHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESM---QLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLLEDAQVAVHLNQV 236
The following BLAST results are available for this feature:
BLAST of DY270990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
PSA6_SCHPO3.609e-1231.39Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA1_CAEEL6.155e-1226.37Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270990 ID=DY270990; Name=DY270990; organism=Citrus clementina; type=EST; length=1017bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACTT
CGTAATTTGTTTGTTACGGGAAACGATTATATTTGTTTATGATTGGGAAT
GCACCCATTTGAAACTTTTTGTTATTGGGGCGGGGTTTGACCTGCCTATC
AAAAACCCCCAAATCTGGTTTCCTTGAAAAACTGAATCAATCCTCATTGG
TAGAAACGATAAGTAACCTAAAGGGAAATTTAAAATTAAATCTTATAAAA
AAAAAAAAAAACAACCCCAATTTTCTTTGACAAAAGGTTGGCCATAAAAA
GAAACCCTTTCTTTATCATTTGTTGGGCACGAAAAAGGGCCACTATCAAT
CCCAAAAAAAATTCTTTTTTTCTTCACCCCCGCGCACATCCCCCACTTAG
GGATATCGTCATAAAAA
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