DY271014

Overview
NameDY271014
Unique NameDY271014
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP4 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.322e-25
Identity = 76/261 (29.12%), Postives = 131/261 (50.19%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG------FEGDNMIERSTHLDWY-KGPTLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLETSQWGAL 846
            + K H+NI  IGHVD GK+T T  +   L  + +    ++++               +D    E+ RGITI+ A  ++ETT+ +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D       +   + +  E+   L    ++ + +P +  SG        G+   +R  + +W  K   L+DA+D+ I  P+R  +KP  + +++V+ + G  T   G +
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAAARKYDE---------------IDAAPEEKARGITINTAHVEYETTQRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLAKQVGVPSIVVFLNKVDQLD---DEELLELVELELRELLTSYDFDGDNIPIIRGSGLMALEAMTGNPKTQRGDN-EWVDKIYELMDAVDSYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRI 242          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_PROM3 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9303) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 77/255 (30.20%), Postives = 124/255 (48.63%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG-DNMIERSTHLDWYKGPTLLDALD-NINEPKRPSNKPLSLPLQEVYKMVGLETSQWGAL 846
            + K H+NI  IGHVD GK+T T  +   L    +  ++ + +               +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V +SG +  +   E    +D      L+DA+D +I EP+R   KP  + +++V+ + G  T   G +
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITSVLAKKGQAKVQDYAE---------------IDGAPEERERGITINTAHVEYETDGRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEIIELVEMEIRELLSSYDFPGDDIPIVQVSGLKAIEGEAEWEAKID-----ELMDAVDTSIPEPEREIEKPFLMAVEDVFSITGRGTVATGRI 232          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 79/255 (30.98%), Postives = 123/255 (48.24%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWYKGPTLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLETSQWG 840
            + K H+NI  IGHVD GK+T T  +   L G  +   + F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P +    +   EGD     +  L       L++A+D+ I EP R  +KP  +P+++V+ + G  T   G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQ---------------IDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKALEGD-----TGELGEQAIMKLMEAVDSYIPEPVRAIDKPFLMPVEDVFSISGRGTVATG 232          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_FRAAA (Elongation factor Tu OS=Frankia alni (strain ACN14a) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 80/254 (31.50%), Postives = 123/254 (48.43%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTHLDWYKGPTLLDAL----DNINEPKRPSNKPLSLPLQEVYKMVGLET 828
            + K H+NI  IGH+D GK+T T  +   L               A  +   F     +DK   E+ RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L    +  + VP + +S     EGD         +W  G  LL+ +    D+I EP+R  ++P  +P+++V+ + G  T
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTAAITKVL-------------HDAHPDLNPFTPFDQIDKAPEEKARGITISIAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVD---DEEILELVELEVRELLSSYEFPGDDVPVIRVSALKALEGDK--------EW--GAKLLELMAAVDDSIPEPQRDIDRPFLMPIEDVFTITGRGT 228          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 86/257 (33.46%), Postives = 129/257 (50.19%), Query Frame = 1
Query:   82 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTHLDWYKGP--TLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLET 828
            MGKEK      H+NI  IGH+D GK+T T   I K+  +             +M  ++  Y  + DK   E+ERGITI  A  ++ETT  +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  +  P +  S  +    +E  +  D    P   LLDA D+ I EP+R ++KP  +P+++V+ + G  T
Sbjct:    1 MGKEKFERTKPHVNIGTIGHIDHGKTTLTA-AITKIASL-------------KMGSKAVAYDEI-DKAPEEKERGITIATAHVEYETTLRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPSIVVFLNKCDMVD---DEELLELVELEVRELLSSYDFPGDDTPVIRGSALKA---LECDSADDDAAKPILELLDACDSYIPEPERDTDKPFLMPIEDVFSISGRGT 229          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 88/260 (33.85%), Postives = 124/260 (47.69%), Query Frame = 1
Query:   82 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD--NMIERSTHLDWYKGPTLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLET 828
            MGKEK      H+NI  IGH+D GK+T T  +                K A   +   F     +DK   E+ERGITI  +  ++ET K +   +D PGH D+IKNMITG +Q D  +L++ +T G          QTREH LLA  +GV Q++   NK D       +   + +  EV   L    +  + VP +    +   E D  N  E    LD      LLDA D+ I EP R  +KP  +P+++V+ + G  T
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KVANLKSGGKFISYDEIDKAPEEKERGITIATSHVEYETDKRHYAHVDCPGHADYIKNMITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPQLVVFLNKCDLVD---DEELLELVELEVRELLSSYDFPGDDVPVIRGSALKALESDDPNSAEAKCILD------LLDACDSFIPEPVRDIDKPFLMPIEDVFSISGRGT 229          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWYKGPTLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLETSQWG 840
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V    +   E  +  E++  +D      L++A+D+ I  P+R +++P  +P+++V+ + G  T   G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALEVLENQDNAEKTKCID-----ELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATG 232          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBL (Elongation factor Tu OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWYKGPTLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLETSQWG 840
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V    +   E  +  E++  +D      L++A+D+ I  P+R +++P  +P+++V+ + G  T   G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALEVLENQDNAEKTKCID-----ELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATG 232          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWYKGPTLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLETSQWG 840
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V    +   E  +  E++  +D      L++A+D+ I  P+R +++P  +P+++V+ + G  T   G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALEVLENQDNAEKTKCID-----ELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATG 232          
BLAST of DY271014 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.087e-24
Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 1
Query:   88 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTHLDWYKGPTLLDALDN-INEPKRPSNKPLSLPLQEVYKMVGLETSQWG 840
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V    +   E  +  E++  +D      L++A+D+ I  P+R +++P  +P+++V+ + G  T   G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALEVLENQDNAEKTKCID-----ELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATG 232          
The following BLAST results are available for this feature:
BLAST of DY271014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CYAP48.322e-2529.12Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_PROM31.087e-2430.20Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_GEOUR1.087e-2430.98Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_FRAAA1.087e-2431.50Elongation factor Tu OS=Frankia alni (strain ACN14... [more]
EFTU_DESDG1.087e-2433.46Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_DESDA1.087e-2433.85Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_CLOBM1.087e-2431.25Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBL1.087e-2431.25Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBK1.087e-2431.25Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH1.087e-2431.25Elongation factor Tu OS=Clostridium botulinum (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271014 ID=DY271014; Name=DY271014; organism=Citrus clementina; type=EST; length=1227bp
CTCTCTCAATTTCCTTAAGGCGGCGAGAGAGAACCATTTTCGCGAATATC
ATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTC
ACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACC
ACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGA
GAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACG
CCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATT
GATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCAT
TGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCT
CACAGGCTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTT
GAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGC
TTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACG
CCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAG
GTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCC
ACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATC
AATGAGCCGAAGAGGCCCTCAAACAAGCCCCTTTCTCTGCCACTCCAGGA
AGTGTACAAGATGGTGGGATTGGAAACGTCCCAGTGGGGCGCGTTGAGAC
CGGTGTCCCCAAGCCTGGGTAGGTGGGTGACTTTGGGCCCTCCGGGTTGG
AAACTGAGGTTTATTCTGTTGAAATGCCCCCCAAGCCCTGCAGGAGGCCT
TTCGGGGTGAAAGGTTGGGTCTAAGGGGAAAAAGTTGCCTGCAAGGGACA
CAAGCCGTGTTTTGTTGTTCTCCACCCCAAGGGATAACCCTCCCGGGAAA
CCGCCCCCCTTCCCCCCCCAGGGTCTCCTCCCAAACCCCCCTCTGGGCAC
AAAATTGGAAAAAGGAAATTTCCCCCCCGGGGGTAGTGGCGCCCCCCCCC
CCCCCCCCCATATCTCCCCGCTACATGTGTTTTTTCGGGGCAGAACATGG
CTAGAGAACAAAAAAATAATAGTCAGA
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