DY271052

Overview
NameDY271052
Unique NameDY271052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1197
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PATJ1_SOLTU (Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.036e-38
Identity = 85/187 (45.45%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   42 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AA +I  FY EHGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPH+  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVT 202          

HSP 2 Score: 22.3274 bits (46), Expect = 5.036e-38
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  607 SDSGRTRTFDLVDGGV 654
            + +G T  F+LVDGGV
Sbjct:  204 TSNGATYEFNLVDGGV 219          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 8.247e-38
Identity = 85/187 (45.45%), Postives = 115/187 (61.50%), Query Frame = 3
Query:   42 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T+M+T PN+   PF+AA +I  F+ EHGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I + DIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTYFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQENLGETRVHQALTEVAISSLDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFTT 202          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT12_SOLTU (Patatin-12 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.134e-37
Identity = 85/187 (45.45%), Postives = 113/187 (60.43%), Query Frame = 3
Query:   42 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            +TVLS              L FL  +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AA +I  FY EHGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLGGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFIT 202          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.093e-37
Identity = 85/187 (45.45%), Postives = 113/187 (60.43%), Query Frame = 3
Query:   42 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AA +I  FY EHGP IF   +   F               KYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTYFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFFR--------------KYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT 201          
The following BLAST results are available for this feature:
BLAST of DY271052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATJ1_SOLTU5.036e-3845.45Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1[more]
PATD3_SOLTU8.247e-3845.45Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT12_SOLTU3.134e-3745.45Patatin-12 OS=Solanum tuberosum PE=2 SV=1[more]
PAT16_SOLTU4.093e-3745.45Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YL02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271052 ID=DY271052; Name=DY271052; organism=Citrus clementina; type=EST; length=1197bp
GAAATAAAATGCCCTTTGCCGGTTCTGCAGAAGGAAAGAAAATAACAGTT
CTGAGCATCGATGGAGGTGGCATTAGGGGCATTATTCCGGGCACTATTTT
AGCCTTTCTTGAATCCAAGCTCCAGGAATTGGATGGACCAAGTGCAAGAA
TTGCAGATTATTTTGATGTAGTAGCAGGAACAAGCACCGGCGGATTGGTA
ACCACCATGCTTACGGCACCCAACAAGGAAGGCGGACCTTTCAGTGCTGC
AAAGGATATCAATAATTTTTATCTTGAGCACGGTCCTAAAATTTTCCCTC
AAATTAGCCGCAGCAACTTCTTGGAATCGATAGCAAGCTCTATCGATAAA
CTGCTGCTTGGACCAAAGTATGATGGGAAGTACCTGCGGACACTAGTAAA
CGAGCTACTAGGAGACGTTACTGTGAAAGAGACTCTTACCAACGTGGTTA
TACCAACTTTTGACATCAAGCTTCTTCAACCAGTCATCTTCTCAACCACC
GATGGAAAAGAGAACGTTTTGAAGAATGCTCGGCTGGCTGATATATGCAT
AAGCACTTCTGCAGCGCCCACTTACTTCCCACCTCACTACTTGGAGACCT
AAAGACAGTGACAGTGGCAGAACCCGAACTTTTGATCTTGTTGACGGTGG
AGTTGCTGCTAATAATCCTACCCTATTGGCAAATAACCCACATATCGAAG
GAAATGGTGAAGCAGAACCCCCATTTCAGGAACAAAAACCCAATGGGCGG
TAAAATTTTGCTGGGACTATCTCTAAGGCCAAGTACCACCCATAAAAAAA
TTGAAATACAATGCCACCCTAAAGCCCCCCAAGTGGGGGCATTTTCCAAT
TGGGATCTATGAAAAATAGTAAAACCCCAAATACTCCGAATCCAACCCGA
AAAGAGAACCTCCAAAAATTGATAGTTTTCCCCTGGTTCCGCCCCTCTTT
TCAATTCCGGCCTGAAGCAAAAGGAAACCTACCCTATTGAATTTTCAAGA
TACATATCCTTTTAACTGGTATAAATCCGCACTTATGTTTTGACATTTTC
CCCCGCATTGTGGAAAAAATACATGAAGACTTTGTTACGTAAACTCTGTA
AAGCCTGTTACTTTTATGAAAAACATACACGCATGCGTGCGAACTGGTAA
TATTCTCGCATTCCTAGAATTGCGTAAGTCTCGACTTTGGAAACGGG
back to top