DY271065

Overview
NameDY271065
Unique NameDY271065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1210
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_RHIL3 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.090e-45
Identity = 92/175 (52.57%), Postives = 122/175 (69.71%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            +P D   RRH   +P +   M +++G ++LD LIDAT+P SIR  +     +   +TE + ++ +++ A+ NKV  S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLN+QTMI DLTGL ++NASLLDE TAAAE MA+   + K K K F + ++CHPQ
Sbjct:   13 QPYDFANRRHIGPSPAEMTDMLKVIGYNSLDGLIDATLPPSIRQKAPLV--WGAPMTEREALDKLRETANKNKVLVSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMICDLTGLDVANASLLDEATAAAEGMAIAERVAKSKAKAFFVDADCHPQ 185          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.090e-45
Identity = 95/181 (52.49%), Postives = 125/181 (69.06%), Query Frame = 3
Query:  339 DTFARRHNSATPEDQAKMSELVGL--------DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK-TFNIASNCHPQ 854
            DTF +RH      +  +M + +          ++L+ LI+ T+PK IR++     + ++ + E+Q+++ ++K+A  NKVY+SFIGMGYY T  P VI RNI+ENP WYT YTPYQAEI+QGRLESLLNFQTM+++ TGLPMSNASLLDE TAAAEAM MC NI K K    F +   CHPQ
Sbjct:   32 DTFPKRHIGPNENEINEMLKSINTSKLSKKNPNSLEQLIEYTIPKDIRLNRELNIEENKVIGENQLLKDLKKIAEKNKVYRSFIGMGYYGTITPHVIQRNILENPGWYTPYTPYQAEISQGRLESLLNFQTMVSEFTGLPMSNASLLDEATAAAEAMQMCVNISKSKGPFAFLVDKYCHPQ 212          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_RHOSK (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.424e-45
Identity = 92/169 (54.44%), Postives = 119/169 (70.41%), Query Frame = 3
Query:  351 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG-LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            RRH   +P +  +M  +VG+ +LD LI+ TVP SIR ++      D   L E +++  M+++A+ N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EIAQGRLE+LLN+QTM+ADLTGLP++NASLLDE TAAAEAM M     K K + F + ++CHPQ
Sbjct:   16 RRHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQET----PLDWAPLAEHELLARMREVAAKNRVMTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVADLTGLPVANASLLDEATAAAEAMTMAERASKSKARAFFVDADCHPQ 180          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS4 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.424e-45
Identity = 92/169 (54.44%), Postives = 119/169 (70.41%), Query Frame = 3
Query:  351 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG-LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            RRH   +P +  +M  +VG+ +LD LI+ TVP SIR ++      D   L E +++  M+++A+ N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EIAQGRLE+LLN+QTM+ADLTGLP++NASLLDE TAAAEAM M     K K + F + ++CHPQ
Sbjct:   16 RRHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQET----PLDWAPLAEHELLARMREVAAKNRVMTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVADLTGLPVANASLLDEATAAAEAMTMAERASKSKARAFFVDADCHPQ 180          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_RHIME (Glycine dehydrogenase [decarboxylating] OS=Rhizobium meliloti GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.424e-45
Identity = 94/175 (53.71%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            KP D   RRH   +P +  +M ++VG  +LD+LID TVP SIR  +     +   +TE + ++ +++ A+ N+   S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ DLTGL ++NASLLDE TAAAEAMA+   + K K K F I  NCHPQ
Sbjct:   13 KPYDFANRRHIGPSPAEMDEMLKVVGYPSLDALIDDTVPPSIRQRTPL--AWGAPMTEREALDKLRETANRNRKLVSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMVCDLTGLDVANASLLDEATAAAEAMAIAERVAKSKAKAFFIDENCHPQ 185          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_BURTA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.424e-45
Identity = 91/182 (50.00%), Postives = 125/182 (68.68%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            +S+ AL+  D FA RH       Q  M + +G     +LIDA +P SIR  +++    F + L+E++ +  +++LA  N+V++S+IG GYY+TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +   + K +   F +A +  PQ
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPLSEAEALAALRELADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADDVLPQ 196          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_ALISL (Glycine dehydrogenase [decarboxylating] OS=Aliivibrio salmonicida (strain LFI1238) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.424e-45
Identity = 90/179 (50.28%), Postives = 117/179 (65.36%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            ++ L   + F RRHN         M   VG + L+ LI+ TVP SIR+      +   GL+E+ M+  ++++A  N +  S+IG GYYNTH P VILRN+ ENP WYT YTPYQ EI+QGRLE+LLN+Q M+ DLTGL ++NASLLDE TAAAEAM +C    K K  TF +A + HPQ
Sbjct:    5 LQQLGTDNEFIRRHNGPASSQHQHMLNTVGAETLEKLIEETVPSSIRLPQPM--QLPHGLSENAMLAELKQIAQQNTLNTSYIGQGYYNTHTPNVILRNVFENPGWYTAYTPYQPEISQGRLEALLNYQQMVMDLTGLDIANASLLDEATAAAEAMTLCKRGGKNKSSTFFVADDVHPQ 181          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_VARPS (Glycine dehydrogenase [decarboxylating] OS=Variovorax paradoxus (strain S110) GN=gcvP PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.859e-45
Identity = 88/180 (48.89%), Postives = 122/180 (67.78%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            S++ L+ ++ F  RH      D+A+M  ++G +    LID  VP +IR    K  +     TE+  +  ++ +A+ NKV++SFIG GYY TH P VILRN++ENPAWYT YTPYQAEI+QGR+E+LLNFQTM+ DLTG+ ++NAS+LDE TAAAEAM +     K K   F ++ +CHPQ
Sbjct:    8 SLQQLENAEEFLARHIGIDAADEARMLPVIGSETRAELIDGIVPAAIR--RAKPMRLPAPATEADALAELKAIAAKNKVFRSFIGQGYYGTHTPGVILRNVLENPAWYTAYTPYQAEISQGRMEALLNFQTMVCDLTGMAIANASMLDEATAAAEAMTLAKRSVKSKSNVFLVSGDCHPQ 185          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.859e-45
Identity = 95/178 (53.37%), Postives = 124/178 (69.66%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI--QKGKKKTFNIASNCHPQ 854
            L+    F  RH   TP D  KM  L+G  +L  LI+A +P  IR+   +     EGL+E+  ++ ++ LA  N+V++S+IGMGYYN   P VI RNI+ENP WYTQYTPYQAEIAQGRLE+LLNFQT+++DLTGL ++NASLLDE TAAAEAM +  N   Q+G  + F +A +CHPQ
Sbjct:   13 LETDAEFVARHIGITPSDLPKMLSLLGYGSLKELINAVIPPEIRLQ--RPLALSEGLSETAALQKLRTLAQQNQVWRSYIGMGYYNCITPSVIQRNILENPGWYTQYTPYQAEIAQGRLEALLNFQTLVSDLTGLAIANASLLDEATAAAEAMTLSFNACRQRGANR-FLVAQDCHPQ 187          
BLAST of DY271065 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS1 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gcvP PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.859e-45
Identity = 92/169 (54.44%), Postives = 118/169 (69.82%), Query Frame = 3
Query:  351 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG-LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFNIASNCHPQ 854
            RRH   +P +  +M  +VG+ +LD LI+ TVP SIR ++      D   L E +++  M+++A  N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EIAQGRLE+LLN+QTM+ADLTGLP++NASLLDE TAAAEAM M     K K + F + ++CHPQ
Sbjct:   16 RRHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQET----PLDWAPLAEHELLARMREVAGKNRVMTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVADLTGLPVANASLLDEATAAAEAMTMAERASKSKARAFFVDADCHPQ 180          
The following BLAST results are available for this feature:
BLAST of DY271065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_RHIL31.090e-4552.57Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_DICDI1.090e-4552.49Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_RHOSK1.424e-4554.44Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_RHOS41.424e-4554.44Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_RHIME1.424e-4553.71Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_BURTA1.424e-4550.00Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_ALISL1.424e-4550.28Glycine dehydrogenase [decarboxylating] OS=Aliivib... [more]
GCSP_VARPS1.859e-4548.89Glycine dehydrogenase [decarboxylating] OS=Variovo... [more]
GCSP_THEEB1.859e-4553.37Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_RHOS11.859e-4554.44Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271065 ID=DY271065; Name=DY271065; organism=Citrus clementina; type=EST; length=1210bp
GTTTGCAAGAGGCTAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAGGGAAAGAAGAAGACTTTTAATATTGCTAGCAACTGCCACCC
TCAAAAATTGAAATTTGTATTACTAGAGCTGAGGGTTTTGAAATTAAATT
TGTTGTTTCCGAACTTAAAGAAAATTGATTAAAATCCAGGGGATGTTTGG
GGGGTTTTTGGTTTCTTAACCCGGGAACGGAGGGGAAAGTTTTGGAATTA
TGGGGAATTTTATTTAAAAAGGCCCAGGCCAAAGGGAATTTAGGGGTGGT
TTTGGGCAACCGGAATTTTTGTGGATTTTACAAATTTTTAAACCCCCCCC
GAGGTGAAAACGGGGGGGCCGAAATATTTTTTTTGGGGGGCCCCTCCCCC
CCAAAAAAGTTTTGGGGGGGGGGCCCCAAGGGGGGGTTTATAAAGGGAAA
GCCCCCCCCC
back to top