DY271076

Overview
NameDY271076
Unique NameDY271076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1162
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 4.156e-63
Identity = 114/187 (60.96%), Postives = 153/187 (81.82%), Query Frame = 3
Query:   57 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            L+P+VIE +SRGER+YDI+SRLLK+R I I GPI+D  A++V+AQ+LFLE+E+P K IH+Y+NSPGG +TAG+AIYDTMQYI+  ++TIC+GQAASMG+ LLA+G KG+R +LP + IMIHQP GG  GQA D+ IH ++I+R+ D LN L  KHTGQ  E I+++ +RD+FM+  +AKE+GI DEV
Sbjct:    4 LVPIVIEQTSRGERSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEV 190          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP2_RHILO (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium loti GN=clpP2 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 4.156e-63
Identity = 114/188 (60.64%), Postives = 151/188 (80.32%), Query Frame = 3
Query:   54 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            +L+PMV+E ++RGERAYDIFSRLLKERII I GP+ D  A +V AQLLFLE+ENP K I++Y+NSPGG VT+G+AIYDTMQ+I+  ++T+C+GQAASMGSLLL +G K  R A PN+ IM+HQPSGG+ GQA D+  H   IV++   LN +Y KHTG+S E I++ +DRD+FMT ++AK+FG+ D+V
Sbjct:   10 NLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEAENPKKEINLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRFATPNARIMVHQPSGGFQGQASDIERHAMDIVKLKRRLNEVYVKHTGKSYEEIERTLDRDHFMTADEAKDFGLIDKV 197          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 4.156e-63
Identity = 117/189 (61.90%), Postives = 150/189 (79.37%), Query Frame = 3
Query:   51 FSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            F  +P VIE + RGER+YDI SRLLK+RI+ +   I+DD A+V+VAQLLFLESE+P K I++Y+NSPGG VTAGLAIYDTMQY++ P++TIC+GQAASMG++LL +G KG+R ALP+S IMIHQP GG  GQA D+ I  K+I+R+   LN L  KHTGQSIE ++K+ DRDYFM   +AK +GI DE+
Sbjct:    3 FMPVPYVIEQTHRGERSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEI 191          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_RICPU (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia peacockii (strain Rustic) GN=clpP PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.428e-63
Identity = 115/188 (61.17%), Postives = 150/188 (79.79%), Query Frame = 3
Query:   54 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            S +P+V+E +SRGERAYDI+SRLLKERII +   + D  A+++VAQLLFLE+ENP K I+MY+NSPGG VTAGLAIYDTMQYI+  + T+C+GQA SMGSLLL  G KG R +LP+S IMIHQPSGGY GQA D+ IH ++ +++   LN LY KHT Q ++ I+K+M+RD FM+PE+AK+FG+ D +
Sbjct:    2 SYVPIVVEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMSPEEAKKFGLVDNI 189          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPG (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain GB-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.428e-63
Identity = 111/188 (59.04%), Postives = 148/188 (78.72%), Query Frame = 3
Query:   57 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEVY 620
            L+PMVIE S+RGERAYDI+SRLLKER+I + GP+ D  A++VVAQ+LFLE+ENP K IH+Y+NSPGG VTAG++IYDTMQ+I+  ++TIC+GQA SMG+ LL +G KG+R  LPNS +MIHQP GG+ GQA D+ IH ++I+ +   LN L   HTGQ +E IQ++ +RD FM+  +A E+G+ D VY
Sbjct:   19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIQIHAQEILSIKARLNELLAYHTGQDLETIQRDTERDNFMSASRAAEYGLIDSVY 206          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_NITWN (ATP-dependent Clp protease proteolytic subunit OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=clpP PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.428e-63
Identity = 114/188 (60.64%), Postives = 151/188 (80.32%), Query Frame = 3
Query:   54 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            +L+PMV+E ++RGERAYDIFSRLLKERII + G + D+ + +VVAQLLFLE+ENP K I MY+NSPGG VT+GLAIYDTMQ+IR P+ T+C GQAASMGSLLLA+G K  R ALPN+ IM+HQPSGG+ GQA D+ +H ++I+ +   LN +Y KHTGQ+ + I+  ++RD F+T + A++FGI D+V
Sbjct:   10 NLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGGVEDNMSMLVVAQLLFLEAENPKKEISMYINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRHALPNARIMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQTYQAIEDALERDKFLTADMARDFGIVDKV 197          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.428e-63
Identity = 114/188 (60.64%), Postives = 152/188 (80.85%), Query Frame = 3
Query:   54 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            +LIPMVIE ++RGER+YDI+SRLLK+RII I   INDD A+ V+AQ+LFLESE+P K IH+Y+NSPGG V AGLAIYDTMQYIRS ++TIC+G AASMG++LLA+G +G+R  LPNS IM+HQP GG  GQA D+ IH ++I++  + LN +   HTGQ +E I K+ DRD+FM+ E+A+++G+ D+V
Sbjct:    2 NLIPMVIEQTNRGERSYDIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDV 189          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPS (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain SM101 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.428e-63
Identity = 111/188 (59.04%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   54 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            +L+PMV+E +S+GER+YDIFSRLLK+RII ++G +ND TA++VVAQLLFLESE+P K IH+Y+NSPGG +T+G+AIYDTMQYI+  ++TIC+G AASMG+ LL+SG KG+R ALPN+ IMIHQP GG+ GQA D+ IH K+I+++ D LN +  ++T Q +E I+ +++RDYFM   +A E+G+ D+V
Sbjct:    3 NLVPMVVEQTSKGERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKV 190          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens GN=clpP PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.428e-63
Identity = 111/188 (59.04%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   54 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            +L+PMV+E +S+GER+YDIFSRLLK+RII ++G +ND TA++VVAQLLFLESE+P K IH+Y+NSPGG +T+G+AIYDTMQYI+  ++TIC+G AASMG+ LL+SG KG+R ALPN+ IMIHQP GG+ GQA D+ IH K+I+++ D LN +  ++T Q +E I+ +++RDYFM   +A E+G+ D+V
Sbjct:    3 NLVPMVVEQTSKGERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKV 190          
BLAST of DY271076 vs. ExPASy Swiss-Prot
Match: CLPP_CLOP1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.428e-63
Identity = 111/188 (59.04%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   54 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEKAKEFGIFDEV 617
            +L+PMV+E +S+GER+YDIFSRLLK+RII ++G +ND TA++VVAQLLFLESE+P K IH+Y+NSPGG +T+G+AIYDTMQYI+  ++TIC+G AASMG+ LL+SG KG+R ALPN+ IMIHQP GG+ GQA D+ IH K+I+++ D LN +  ++T Q +E I+ +++RDYFM   +A E+G+ D+V
Sbjct:    3 NLVPMVVEQTSKGERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKV 190          
The following BLAST results are available for this feature:
BLAST of DY271076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CARHZ4.156e-6360.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_RHILO4.156e-6360.64ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_MYXXA4.156e-6361.90ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_RICPU5.428e-6361.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEPG5.428e-6359.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITWN5.428e-6360.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ5.428e-6360.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOPS5.428e-6359.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOPE5.428e-6359.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOP15.428e-6359.04ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271076 ID=DY271076; Name=DY271076; organism=Citrus clementina; type=EST; length=1162bp
CTAAATTTCTACCATTGTCGAAACCGTCGGCTCAAATTTCAGCTCGTTCG
TTCAGTCTGATACCGATGGTGATCGAGCACTCGTCGCGAGGGGAGAGAGC
GTACGACATATTCTCGAGGCTTCTCAAGGAGAGAATCATCTGCATCAACG
GACCTATCAACGACGACACCGCCCACGTCGTTGTCGCTCAGCTTCTCTTC
TTGGAGTCCGAAAACCCCTCGAAGCCCATTCACATGTACCTCAACTCCCC
CGGCGGCCAGGTCACCGCAGGTCTTGCTATTTACGATACGATGCAGTACA
TTCGATCTCCAATTAATACTATTTGTTTGGGTCAAGCTGCATCCATGGGT
TCCCTGCTTTTGGCCTCGGGTACCAAGGGGGAAAGGCGGGCACTCCCAAA
TTCAACTATCATGATTCATCAGCCATCTGGAGGGTATAGTGGGCAAGCTA
AGGATATGACAATTCATACAAAGCAGATAGTTCGGGTCTGGGATGCACTC
AATGCTTTATATTGTAAGCACACGGGGCAATCAATAGAGGTTATTCAAAA
AAATATGGATAGAGATTACTTTATGACCCCAGAAAAGGCAAAGGAATTTG
GAATATTTGATGAGGTTTATTGGACAAAGACCAATGGTGTTGGTGACTGT
AGCCGGTGGAAGAGGAAGCAAAAAAGGCAATCAGGCAATGAAGTAAAGGG
TCTAAATTGGTACAGAAGGTAATCCTTCGCGAAATGTATCCACAGTATCT
TCCTTCATTTTAATTTTCGTACCCTTTTTTATAAGTGGTAGCGTAATAAG
GACCTAAGATGGAATAGCTTCCTTCTAGGACTGTCACAATGATTAGGCCT
TTGCTTGCGATGCACGTCTCACCAACCCCAACGCCATACAAGGCACTTTT
CTATTCCTTCTTTTTTATATACATCTCCTACTCCTGCCGTACAATTCCTC
GATATGTAATCCCAATAAGCTTATGTGCCCGTTATCCGCGTGTCGTCTAG
TACTTCTCACCTGGGACTTGATCATTACGACTCGATCACCTATTGTTTAT
CTTATTTACATTAGTGATCTAAGATTTTTGTCCTATCTCGATTGTTTGTG
TACTCTTTTTCATTATTATCTAAATAGATAAATTTCTCCGTCCATAATTT
TAGATTTAATTA
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