DY271083

Overview
NameDY271083
Unique NameDY271083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1155
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ROCA_STAA2 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=rocA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.250e-11
Identity = 59/229 (25.76%), Postives = 94/229 (41.05%), Query Frame = 2
Query:  194 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGG-AEIGQAKTKDPRIFLVSFYGITRWGLR 874
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K             KL+ E+ E   LP  +     G   EIG           V+F G    G R
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK---PAEDTPYIAYKLM-EILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTR 265          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ROCA_STAA1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rocA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.250e-11
Identity = 59/229 (25.76%), Postives = 94/229 (41.05%), Query Frame = 2
Query:  194 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGG-AEIGQAKTKDPRIFLVSFYGITRWGLR 874
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K             KL+ E+ E   LP  +     G   EIG           V+F G    G R
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK---PAEDTPYIAYKLM-EILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTR 265          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ASTD_SORC5 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Sorangium cellulosum (strain So ce56) GN=astD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.250e-11
Identity = 61/242 (25.21%), Postives = 100/242 (41.32%), Query Frame = 2
Query:  191 FVNGKW-KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYGITRWGLRCQKQC---PQKLV 904
            F++G W    G   +S NP     +     AS E  +  + A   A   W +    +R  +V++    L E    L  ++ +E GK   E + EVQ +I   D ++   R+  G    +E  +   +    P GVV V+  +NFP  +   +   AL+ GNCVV+K             +L    +E+  +P  +     GG   G A    P I  + F G +  G    +Q    P+K++
Sbjct:    5 FIDGSWVTGAGEPFASRNPVTQAVVFEGRAASEEQVDAAVAAARGAFAAWRDRGLEERAALVKRFAGVLGEHKARLADVIGLETGKPRWEALTEVQTMIGKIDVSLMAWRERTGE-RQAEAGDATAVVRHRPHGVVAVLGPYNFPGHLPNGHIVPALIAGNCVVFKPSELTPRVAEETARL----WEKAGIPAGVLNLVQGGRRTGVALAGHPGIDGLFFTGSSGTGNALHRQLAGQPEKIL 241          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.250e-11
Identity = 57/232 (24.57%), Postives = 96/232 (41.38%), Query Frame = 2
Query:  191 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYGITRWG 868
            F+N +W       T  ++NP+  + I  V E S ED ++ +KA   A ++   W  + A  RG ++ ++ D +     +L  L +++ GK  +   + ++  V+    +  G + + +G  IP +  +        P+GV G I  +NFP  +  W    AL  GN VV K              L+ E       PG +      G   G A      +  V+F G T  G
Sbjct:   23 FINNEWHDAVSKKTFPTVNPSTGEVICQVAEGSKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDG-DFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEA---GFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVG 250          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ROCA_STAAW (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=rocA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.162e-11
Identity = 59/229 (25.76%), Postives = 93/229 (40.61%), Query Frame = 2
Query:  194 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGG-AEIGQAKTKDPRIFLVSFYGITRWGLR 874
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA  EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K             KL+ E+ E   LP  +     G   EIG           V+F G    G R
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAADEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK---PAEDTPYIAYKLM-EILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTR 265          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: BETB_AGRT5 (Betaine aldehyde dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.162e-11
Identity = 58/214 (27.10%), Postives = 89/214 (41.59%), Query Frame = 2
Query:  218 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGI-GEVQEVIDMCDFAVGLS-RQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQAKTKDPRIFLVSFYG 853
            G    SI PA  + IA +  A+    E  + +   A K W  +    RG ++++  D +RE+   L  L +++ GK + E I  +     D  +F  G++   LNG  IP             PLGV   I A+N+P  +  W A  ALV GN +V+K               ++E+     LP  +F    G  + G      P +  VS  G
Sbjct:   27 GTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQETIVADPTSGADAFEFFGGIAPSALNGDYIP--LGGDFAYTKRVPLGVCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALK----IAEILIEAGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTG 234          
BLAST of DY271083 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.162e-11
Identity = 64/254 (25.20%), Postives = 107/254 (42.13%), Query Frame = 2
Query:  194 VNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQAKTKDPRIFLVSFYGITRWGLRCQKQCPQ-KLVKFYLN*IGKQAI 940
            +NGK+     G T   +NPA+ + IA V EA   D +  +KA   A + +       R  ++ ++ D L +    +  L S++ GK     +  +V   ++   +  GL+ ++NG+V P    N + +    P+GV G I  +NFP  +  +    AL  GN VV K             ++V E       P  +     G GA  G    +   +  ++F G T  G +  +   +  L K  L   GK A+
Sbjct:   24 INGKFVPAVSGKTFEVVNPADEKVIANVAEAEKADVDLAVKAARHAFESFRMTDCQWRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLADKVNGTV-PPRSGNFLGIVKRQPIGVCGQIIPWNFPLLMAAFKLSPALAMGNTVVLKPAEQTPLTAVRLGEMVMEA----GYPDGVLNILPGFGATAGSEIARHMDVDKIAFTGSTAVGHQVMQMAAETNLKKVSLELGGKSAL 272          
The following BLAST results are available for this feature:
BLAST of DY271083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
ROCA_STAA26.250e-1125.761-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA16.250e-1125.761-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ASTD_SORC56.250e-1125.21N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ALDH2_MESAU6.250e-1124.57Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ROCA_STAAW8.162e-1125.761-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
BETB_AGRT58.162e-1127.10Betaine aldehyde dehydrogenase OS=Agrobacterium tu... [more]
ALDH2_LEITA8.162e-1125.20Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271083 ID=DY271083; Name=DY271083; organism=Citrus clementina; type=EST; length=1155bp
CTAATTCATTCCCACTCACTTTCATGTGACATTGTCTTACATAACTAATC
TTTTTTCAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAA
TATGGGATGTGACTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTT
TCTGAGTGAGATCGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATG
GCAAGTGGAAGGCACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAAC
AATCAGAAAATTGCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGA
AGGCATGAAAGCTTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAG
CTCCTAAGAGAGGGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAA
AAACTGCATCATCTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCT
TCCAGAAGGAATTGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTG
CTGTGGGTTTAAGCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGT
CCCAATCATATGATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGT
CATTACAGCATTTAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCA
TTGCACTAGTCTGCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACT
CCTTTGATCACCATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAG
GAACAAGTTACCTGGTGCAATTTTTACCTCTTTTTGTGGGGGGGCTGAAA
TAGGTCAAGCAAAAACAAAAGATCCACGTATTTTTCTGGTTTCATTTTAT
GGGATAACAAGGTGGGGTTTAAGGTGCCAAAAACAATGCCCTCAAAAATT
GGTAAAGTTTTACTTGAATTAAATTGGAAAACAAGCAATTAATTTTTAAG
GGATAATGCCAAAATACAAAAAAACTGTTTCCTTTCTGTCCCATTTTCCG
GGGGGTCGGAAAAAGCGGGGCCAGCCCTGGCCCAACTTTTTTTTTAAAAA
GGGCCTTTTTCCCCAAAAACCAATTACACAAAAAACTGGGCCTTTTAATC
ACACCAATATTAGTGGGTTAACAAAAATAATTATTAAAAAAATAGAAAAA
ACTTT
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