DY271147 | Citrus Genome Database

Overview


Name	DY271147
Unique Name	DY271147
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	642

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_NYMAL (ATP synthase subunit c, chloroplastic OS=Nymphaea alba GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_NUPAD (ATP synthase subunit c, chloroplastic OS=Nuphar advena GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_NICTO (ATP synthase subunit c, chloroplastic OS=Nicotiana tomentosiformis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_NICSY (ATP synthase subunit c, chloroplastic OS=Nicotiana sylvestris GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_NASOF (ATP synthase subunit c, chloroplastic OS=Nasturtium officinale GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_NANDO (ATP synthase subunit c, chloroplastic OS=Nandina domestica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_MORIN (ATP synthase subunit c, chloroplastic OS=Morus indica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_MARPO (ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_MANES (ATP synthase subunit c, chloroplastic OS=Manihot esculenta GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DY271147 vs. ExPASy Swiss-Prot
Match: ATPH_LOBMA (ATP synthase subunit c, chloroplastic OS=Lobularia maritima GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 2

Query:    2 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 244
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of DY271147 vs. ExPASy Swiss-Prot

BLAST of DY271147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_NYMAL	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nymphaea ...	[more]
ATPH_NUPAD	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nuphar ad...	[more]
ATPH_NICTO	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_NICSY	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_NASOF	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nasturtiu...	[more]
ATPH_NANDO	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nandina d...	[more]
ATPH_MORIN	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Morus ind...	[more]
ATPH_MARPO	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Marchanti...	[more]
ATPH_MANES	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Manihot e...	[more]
ATPH_LOBMA	2.985e-25	80.25	ATP synthase subunit c, chloroplastic OS=Lobularia...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP8YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY271147 ID=DY271147; Name=DY271147; organism=Citrus clementina; type=EST; length=642bp
CATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCTG
TTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTGCTGCGGGC
CAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCGGAGGGAAAAATACG
AGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATG
GGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAATCC
TAGAAATAGGAAGGGCAATTTACAATTTACTTATTTTTTTTTCTCTTATT
TATTATATCTGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTAA
GTGATGCTGCAACAAACGAGGGGTTTTGCAATTGACAGGAGTCCCGGCCC
CTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATTCA
AAGAAAGGATTTCAAAATCAAATTTTTGACCCTGTTTCGAAATAGGTAAA
TTACTAAAAAAACAAATAAAATTAAATAAATTATATATTACG