DY271166

Overview
NameDY271166
Unique NameDY271166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.012e-30
Identity = 76/151 (50.33%), Postives = 90/151 (59.60%), Query Frame = 3
Query:   72 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 515
            R  NV DP+S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.879e-26
Identity = 60/134 (44.78%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   66 GGRRTNVFDPVSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 461
            GG      +PVS+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.500e-25
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  192 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 461
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.500e-25
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  186 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 461
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.658e-23
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  168 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 458
            R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  294 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 515
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 3
Query:   84 VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 461
            +FD ++ D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   21 LASQFAIMSLIPSIFGG--RRTNVFDPVSLDVWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 458
            LAS  A  +L+P   GG  R   V +   L   DPF       L + P      + +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   20 LASTAADGALLPWFGGGGARDEAVPELGLLAAADPF-----RILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  153 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 461
            A ++A E +  A AR DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of DY271166 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  150 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 461
            NAPS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DY271166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ3.012e-3050.3316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ5.879e-2644.7818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN6.500e-2556.6722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA6.500e-2554.3522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH4.658e-2351.0222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.770e-2272.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ8.785e-2244.0917.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ1.187e-1840.2623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ2.645e-1845.0521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE7.203e-1641.5117.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271166 ID=DY271166; Name=DY271166; organism=Citrus clementina; type=EST; length=734bp
CGAAGTTGTTGTTCATTTAATTAGCGTCCCAGTTTGCCATAATGTCACTC
ATTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTC
ATTAGATGTATGGGATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCA
ACGCGCCGTCTTCGGCTAGGGAAACATCCCAATTCGCCAATGCAAGAATT
GACTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGG
GCTGAGGAAAGAAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGC
AGATAAGCGGAGAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGG
CATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCC
CGACAATGCTAAGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGC
TCACAGTCACCGTTCCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCT
ATTGAGATCTCTGGCTAAGTGATAACTGTAAATGTTTTCAAGATAGTGTC
TTTGGTTTGCTAATAAATTTGGTACGAAAGCAAACCCCTTGTGTGTTTGT
ATGTGTGTGTGTGTTTGTTTTCTTCCCTTCCCCCTGTTTAATTTGATGTG
ATTATGTTTGTGTGTTTGCAAGAACTTCAGGAGCCAGTCTCAAGCGTTGT
AACCTATTTTTTAAATGAAAAAAAAGTGTGATGG
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