DY271174

Overview
NameDY271174
Unique NameDY271174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.106e-62
Identity = 103/132 (78.03%), Postives = 117/132 (88.64%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 396
            G+PY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD GD+V+Y+TDP L
Sbjct:  241 GVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 372          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.579e-20
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 273
            G+P  +   +L L+T+L H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +EAT+A +P+LG+YYR
Sbjct:  256 GVPLLVVNGFLVLITFLQHT--HPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYR 345          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.688e-19
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 273
            G+P  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +E T+A +P+LG YY+
Sbjct:  257 GVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQ 346          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.880e-19
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIG-THVIHHLFPQIPHYHLIEATEAARPVLGKYYR 273
            G+P     ++ D++TYLHH      LP Y   EW++LRG L+T+DRD+G+ N++ HD+  THV+HHLF  IPHYH  EA +A   VLG +Y+
Sbjct:  249 GIPVLGVFIFFDIITYLHHT--HLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYK 338          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.761e-19
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 273
            G+P  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHY+ +EAT+A +P+LG YY+
Sbjct:  256 GVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.094e-18
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNI-HHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 273
            G+P  I   +L  +TYL H      LP Y   EW +L+G L T+DRDYG  N + HH   THV HHLF  +PHYH +EAT A +P+LG+YY+
Sbjct:  260 GVPLLIVNGFLVTITYLQHTHFA--LPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQ 349          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.580e-17
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    4 LPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQ 381
            +PY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GDVV+++
Sbjct:  280 IPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.064e-17
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    4 LPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQ 381
            +PY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GDVV+++
Sbjct:  280 VPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
The following BLAST results are available for this feature:
BLAST of DY271174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3E_BRANA2.106e-6278.03Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN7.579e-2050.00Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU1.688e-1950.00Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL2.880e-1947.83Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD6E_ARATH3.761e-1950.00Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.094e-1848.91Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORIS1.580e-1739.06Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP2.064e-1739.06Delta(12) fatty acid desaturase OS=Mortierella alp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271174 ID=DY271174; Name=DY271174; organism=Citrus clementina; type=EST; length=974bp
GGCCTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGACTTACTT
GCATCACCATGGGCATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAAT
GGAGTTACTTAAGGGGAGGGCTCACAACACTTGATCGTGACTATGGATGG
TTCAATAACATCCACCACGATATTGGAACCCACGTCATACATCACCTCTT
CCCTCAGATCCCGCATTACCACTTAATAGAAGCAACTGAGGCTGCTAGAC
CAGTTCTTGGAAAATATTACCGTGAGCCAAAGAAATCGGGACCGATACCT
TTTAACCTTTTTGGAGATTTAATTAGAAGCATGAGTAAAGACCACTATGT
TAGTGACAATGGCGATGTTGTTTACTACCAGACCGACCCACAGCTTAACG
GCTCTTCAAAATCAGGGTAAAGCCGGCAAGCTTTCTTATCTTGAACCGGC
GTATTTAAATACCTTTAGCAATCCTTAAGCAGTCTTATAATCTACAATGA
TTTGACGATCCCCATTTCGGTACGGGATTCCCTATTTATTACAAGATGAA
TTGGCATCTAACAAAGATGATTGCGGCTGCTTCTTGAAATTAAGGCAGAA
TACATGAAAGTTTTCCACATTTGGAAGTAATTCTGAAGGGAAAATGTATA
TAATTCTTCCTGAAAAAGTAATATTCTCTTCAGCATAATTATTCATGTAT
TGTTTAAACCAAAACTTCCTATTTGAGGAAAAATAATGAGAAATTTTTGA
AAAAAAAAAAAAAAAAAAACCCCAATTTTTTTTGTAAAAGTTGGCCTTAA
AAAAAAGCTTTGCTTTTCATTTTTTTGGCACGAAACAGGGCCCTATCCAT
CAAAAAAAAATCCTTTTTTTCCCCCCCGCCAAAAACCCCCAATAAGGATC
TTAAATAAAGGGGCACAACTTTTTTCCGGGCCCCCTCTGGCCCCGGCTCC
AAAAATCCCTGGTTTTTCTTTTTA
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