DY271203

Overview
NameDY271203
Unique NameDY271203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.832e-39
Identity = 87/178 (48.88%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  156 NTAAADPEMLQDVCVADL--------TSPIKVNGFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            +T  ADPE +QD CVA +         +     GFPCK   + +  DFF   LA  + T+N FG  VTAAN +T PGLNTLGVS+ R+D APGG+NP H+HPRATE++ V+ G++  GF +TA    SK + +GE FV PRG++HFQ N G V A VI  FNSQ+ G      TLF S
Sbjct:   21 STCIADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGS 198          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.005e-39
Identity = 95/171 (55.56%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPC---KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD CVAD  SP+ VNGF C   K   ++  F +  L  P  TN   GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKV-GSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGS 191          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.537e-39
Identity = 95/171 (55.56%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPC---KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD CVAD  SP+ VNGF C   K   ++  F +  L  P  TN   GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKV-GSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGS 191          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.537e-39
Identity = 92/170 (54.12%), Postives = 107/170 (62.94%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMD-FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD CVAD  SP+ VNGF C    +   D FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  +A  +SQ  G   IA  +F S
Sbjct:   23 ASDPSPLQDFCVADKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGS 192          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.537e-39
Identity = 93/175 (53.14%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A DP  LQD CVAD  SP++VNGFPCK   + +  DFF +  L KP   T +  GS VT  NV  + GLNTLG+S+ARIDYAP G NPPHTHPRATEI+ V EG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA  +SQ  G   IA  +F S
Sbjct:   22 AFDPSPLQDFCVADRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGS 196          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 93/175 (53.14%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD CVAD  SP++VNG PCK   + S  DFF +  L KP   T +  GS VT  NV  + GLNTL +S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA  +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGS 196          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 87/171 (50.88%), Postives = 107/171 (62.57%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP+ LQD CVADL    + VNG PCK      D   FS KLAK   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++  FNSQ  G   + LTLF S
Sbjct:   23 ASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGS 193          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 91/170 (53.53%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A+DP  LQD CVAD+ SP+ VNGF C    + +   FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N   SK + KG+ FVFP GL+HFQ N N   PA  IA  +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDFCVADMHSPVLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGS 191          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 87/171 (50.88%), Postives = 107/171 (62.57%), Query Frame = 3
Query:  165 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD--FFSDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            A DP+ LQD CVADL S + +NG+PCK   +  D   FS +LA     N N  GS VT  +V   PG+NTLGVS+ RID+APGG NPPH HPRATE+  VL G+L VG      T N   S+ ++ GE FV PRGL+HFQ N G   A+++  FNSQ  G   + LTLF S
Sbjct:   26 ANDPDPLQDFCVADLDSEVTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGS 196          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 90/173 (52.02%), Postives = 106/173 (61.27%), Query Frame = 3
Query:  165 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAST 662
            A DP  LQD CVA  DL + + VNG  CK        DFF   L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA T+F ST
Sbjct:   22 ANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGST 194          
The following BLAST results are available for this feature:
BLAST of DY271203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL38_ORYSJ3.832e-3948.88Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ5.005e-3955.56Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL89_ORYSJ6.537e-3955.56Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL87_ORYSJ6.537e-3954.12Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL121_ORYSJ6.537e-3953.14Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL124_ORYSJ1.902e-3853.14Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
OXO2_HORVU2.484e-3850.88Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL811_ORYSJ2.484e-3853.53Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL33_ORYSJ5.534e-3850.88Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL114_ARATH2.746e-3752.02Germin-like protein subfamily 1 member 14 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271203 ID=DY271203; Name=DY271203; organism=Citrus clementina; type=EST; length=662bp
CTCTCTCTCTCTCTTTCTCCATCTCTATCTTTTCTTCTTTCTTTATCTTC
GCCTGCAGCAATAACAAGATCATAATTGAACTTACTTTTGTAACCATGGC
TGCTGCTGCTGCTGGTGCTTTGACACTTTTTGTTGTCACTGTTGCTGTGA
TCTTGAACACTGCTGCTGCTGATCCCGAAATGCTTCAAGATGTTTGTGTG
GCAGACCTCACTTCCCCTATTAAAGTCAATGGGTTCCCCTGCAAAGCAAA
CTTTTCAGAGATGGACTTTTTCTCAGACAAATTAGCAAAGCCAGCAGCCA
CAAACAACACGTTTGGTTCAACAGTAACAGCAGCCAATGTCCAAACAATC
CCAGGCCTAAATACTCTTGGTGTCTCACTCGCACGCATTGACTATGCCCC
CGGCGGCATAAACCCGCCGCACACGCACCCCCGTGCCACCGAGATCGTCT
TTGTCCTCGAGGGTCAACTCGACGTAGGCTTCTTCACTACTGCCAACGTT
TTGGTATCAAAATCCATCAAAAAGGGTGAAAACTTCGTGTTTCCAAGAGG
GTTGGTGCATTTCCAGAAGAACAATGGAAATGTCCCTGCTTCTGTTATTG
CTGGCTTTAATAGCCAGCTGCAGGGGACTCAAAACATTGCTCTTACATTG
TTTGCATCTACG
back to top