DY271203

Overview
NameDY271203
Unique NameDY271203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  183 LQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            +QD CVAD   P   +G+ CK     +E DF    L     T+N   + VT A      G+N LGVSLAR+D A GG+ P HTHP A+E++ V++G +  GF ++AN +  K++ +G++ VFP+GL+HFQ N+G  PA     F S   G Q +   LFA+
Sbjct:   22 VQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFAN 182          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 3
Query:  183 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF 653
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N F + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G+ PA     F+S   G Q +   LF
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALF 178          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.330e-28
Identity = 73/169 (43.20%), Postives = 101/169 (59.76%), Query Frame = 3
Query:  171 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            DP  LQD CVA + T+ + VNG  CK     +  DF++  L  P  T    G+  T  +V+ +PGLNTLGV +AR D+APGG++PPHTHPR ++I  V++G+L VGF ++      L +K +  G+ FVFP+GL+HF  N G   A VI+   SQ  G   I   +F S
Sbjct:   26 DPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGS 194          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.044e-28
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 3
Query:  183 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF 653
            +QD CVADL +P    GF CK  A+    DF    L     T+N   + VT A V   PG+N LG+S+AR+D A GG+ P HTHP A+E++ V +G +  GF  + N    ++++KG+  VFP+GL+HFQ N G  PA   A F S   G Q +   LF
Sbjct:   25 VQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALF 183          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 66/159 (41.51%), Postives = 89/159 (55.97%), Query Frame = 3
Query:  183 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF 653
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N   + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G  PA     F+S   G Q +   LF
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALF 178          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  180 MLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFT-TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            + QD CVADLT      G+PCKA+    DF    LA    T+N   + VT A V   PG+N LG+S AR+D A GG+ P HTHP A+E++FV +G +  GF T ++N + ++++  G+  VFP+GL+H+Q N G   A  +  F+    G Q     LFA+
Sbjct:   24 LTQDFCVADLTCSDTPAGYPCKASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFAN 184          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.973e-27
Identity = 77/169 (45.56%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  171 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            DP  LQD CVA    + + VNG  CK     +  DFF+  L  P  TN   GS V  AN   IPGLNTLGV +ARID+APGG+ PPH HPRA+EI+ V++G+L VGF ++ +    L SK +  G+ FV P GLV F  N G   A  I    SQ  G  ++   +F S
Sbjct:   26 DPSPLQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGS 191          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 68/171 (39.77%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  168 ADPEMLQDVCVADLTSP---IKVNGFPCK--ANFSEMDFFSDKLAKPAATNNT-FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASV-IAGFNSQLQGTQNIALTLFAS 659
            +DP+ LQD CV+   S    I +NG  CK     S  DF +  L++P  T    F   VT      +PGLNT+G+++AR+D+   G+ PPH HPRA+E+   L+G L VGF  T+  + ++ +  GE FVFP+GL+HF  N   V +++ ++G +SQ  GTQ ++L+ F S
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFIS 188          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.395e-27
Identity = 64/164 (39.02%), Postives = 98/164 (59.76%), Query Frame = 3
Query:  180 MLQDVCVADLTSPIKV-NGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-NVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFAS 659
            + QD CVA+L       +G+ C+  A  +  DF+S  LA+P      F +++ +A VQ  P +N LG+S +R+D  PGG+ P HTHP  +E+++VL+G L  GF +++ N +  K + KG  FVFP+GL+HFQ N G+  A   A ++S   G Q +   LFA+
Sbjct:   27 LTQDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFAN 190          
BLAST of DY271203 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.720e-26
Identity = 69/172 (40.12%), Postives = 99/172 (57.56%), Query Frame = 3
Query:  171 DPEMLQDVCVADLTSP-----IKVNGFPC-KANFSEMDFFS----DKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLF 653
            DP++L D CVAD  +        +NG  C     +  D F+     +   PAAT   F +T+T+    ++PG N  G+++ARID APGG+ PPH+HPRA+E   VL G + VGF  T+  L ++ ++ GE FVFPR +VHF  N +   PA V++G NSQ  G Q +  + F
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAF 193          
The following BLAST results are available for this feature:
BLAST of DY271203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL33_ARATH1.046e-2840.99Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
AB19B_PRUPE1.046e-2842.14Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL14_ARATH2.330e-2843.20Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
ABP20_PRUPE3.044e-2842.14Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
AB19A_PRUPE5.192e-2841.51Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL814_ORYSJ6.780e-2840.99Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL13_ARATH1.973e-2745.56Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL11_ARATH3.365e-2739.77Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL813_ORYSJ4.395e-2739.02Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL31_ORYSJ3.720e-2640.12Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271203 ID=DY271203; Name=DY271203; organism=Citrus clementina; type=EST; length=662bp
CTCTCTCTCTCTCTTTCTCCATCTCTATCTTTTCTTCTTTCTTTATCTTC
GCCTGCAGCAATAACAAGATCATAATTGAACTTACTTTTGTAACCATGGC
TGCTGCTGCTGCTGGTGCTTTGACACTTTTTGTTGTCACTGTTGCTGTGA
TCTTGAACACTGCTGCTGCTGATCCCGAAATGCTTCAAGATGTTTGTGTG
GCAGACCTCACTTCCCCTATTAAAGTCAATGGGTTCCCCTGCAAAGCAAA
CTTTTCAGAGATGGACTTTTTCTCAGACAAATTAGCAAAGCCAGCAGCCA
CAAACAACACGTTTGGTTCAACAGTAACAGCAGCCAATGTCCAAACAATC
CCAGGCCTAAATACTCTTGGTGTCTCACTCGCACGCATTGACTATGCCCC
CGGCGGCATAAACCCGCCGCACACGCACCCCCGTGCCACCGAGATCGTCT
TTGTCCTCGAGGGTCAACTCGACGTAGGCTTCTTCACTACTGCCAACGTT
TTGGTATCAAAATCCATCAAAAAGGGTGAAAACTTCGTGTTTCCAAGAGG
GTTGGTGCATTTCCAGAAGAACAATGGAAATGTCCCTGCTTCTGTTATTG
CTGGCTTTAATAGCCAGCTGCAGGGGACTCAAAACATTGCTCTTACATTG
TTTGCATCTACG
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