DY271213

Overview
NameDY271213
Unique NameDY271213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length968
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 5.733e-28
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLM 507
            M   + GL GLAVMG+NLALNI   GF ++VYNRT  K +  + +RA+ +  +P     D   FV S+++PR I+++VKAG PVD  ++ L   ++ GD IIDGGN  + +TERR K +  LGL ++  GVSGGE GA  G  LM
Sbjct:    1 MALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSLED---FVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEALGLGFMGMGVSGGEEGALNGPSLM 142          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_BACSU (6-phosphogluconate dehydrogenase, decarboxylating OS=Bacillus subtilis GN=gntZ PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.733e-28
Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   91 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLM 507
            IG+ GL VMG N+ALN+A KG  ++VYN T    D+ +++   +   P   +++ E FV S++KPR I ++V AG PVD  I++L   +E+GD I+DGGN  YE+TERR   + E G+ YL  G+SGGE GA  G  +M
Sbjct:    5 IGVIGLGVMGSNIALNMANKGENVAVYNYTRDLTDQLIQKLDGQSLSP---YYELEDFVQSLEKPRKIFLMVTAGKPVDSVIQSLKPLLEEGDVIMDGGNSHYEDTERRYDELKEKGIGYLGVGISGGEVGALTGPSIM 140          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_SALTY (6-phosphogluconate dehydrogenase, decarboxylating OS=Salmonella typhimurium GN=gnd PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.780e-28
Identity = 63/144 (43.75%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLM 507
            M + +IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +  A+  G   L  ++  + FV S++ PR I+++VKAG+  D  I +L  Y+EKGD IIDGGN ++++T RR + ++  G  ++ TGVSGGE GA  G  +M
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIM 141          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Klebsiella pneumoniae GN=gnd PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 9.780e-28
Identity = 64/151 (42.38%), Postives = 99/151 (65.56%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLMAEESIEA 528
            M + +IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +  A+  G   L  ++  + FV S++ PR I+++VKAG+  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++ TGVSGGE GA  G  +M     EA
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENTGK-KLVPYYTVQEFVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEA 148          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_DROSI (6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila simulans GN=Pgd PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 68/142 (47.89%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   82 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLM 507
            Q  I L GLAVMGQNL LN+ EKGF +  YNRT +KV E +    +  N+   G    +  V  ++ PR +++LVK GS VD  I+ L   +  GD IIDGGN  Y++T RR   +A+LGLLY+ +GVSGGE GA+ G  LM
Sbjct:    4 QADIALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFLANEAKGTNV--IGADSLKDMVSKLKSPRKVMLLVKGGSAVDDFIQQLVPLLSAGDVIIDGGNSEYQDTSRRCDELAKLGLLYVGSGVSGGEEGARHGPSLM 143          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_CAEEL (6-phosphogluconate dehydrogenase, decarboxylating OS=Caenorhabditis elegans GN=T25B9.9 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLM 507
            M +  I + GLAVMGQNL LN+ + GF +  +NRT   VD+ +  A +     + G H  E     +++PR ++ML+KAG+PVD  I  +  ++E+GD IIDGGN  Y ++ RR + +A  G++++  GVSGGE GA+FG  LM
Sbjct:    1 MAEADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFL--ANEAKGTKIIGAHSIEEMCKKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIMFVGCGVSGGEEGARFGPSLM 142          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIFL (6-phosphogluconate dehydrogenase, decarboxylating OS=Shigella flexneri GN=gnd PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 63/151 (41.72%), Postives = 99/151 (65.56%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLMAEESIEA 528
            M + +IG+ G+AVMG+NLALNI  +G+ +S++NR+  K +E +  A+  G   L  ++  + FV S++ PR I+++VKAG+  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++ TGVSGGE GA  G  +M     EA
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLAPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEA 148          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_RAT (6-phosphogluconate dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Pgd PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLMAEESIEA 528
            M Q  I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ +  AK+     + G    +  V  ++KPR +I+LVKAG  VD  I+ L   ++ GD IIDGGN  Y +T RR + +   G+L++ +GVSGGE GA++G  LM   + EA
Sbjct:    1 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--AKEAKGTKVIGAKSLKDMVSKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCQDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEA 149          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_ECOLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.179e-27
Identity = 63/151 (41.72%), Postives = 99/151 (65.56%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLMAEESIEA 528
            M + +IG+ G+AVMG+NLALNI  +G+ +S++NR+  K +E +  A+  G   L  ++  + FV S++ PR I+++VKAG+  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++ TGVSGGE GA  G  +M     EA
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEA 148          
BLAST of DY271213 vs. ExPASy Swiss-Prot
Match: 6PGD_HUMAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 2.845e-27
Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   76 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLCGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLATGVSGGENGAQFGNPLMAEESIEA 528
            M Q  I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ +  A +     + G    +  V  ++KPR II+LVKAG  VD  I+ L   ++ GD IIDGGN  Y +T RR + +   G+L++ +GVSGGE GA++G  LM   + EA
Sbjct:    1 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEA 149          
The following BLAST results are available for this feature:
BLAST of DY271213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SYNE75.733e-2846.906-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BACSU5.733e-2845.326-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SALTY9.780e-2843.756-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPN9.780e-2842.386-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DROSI1.277e-2747.896-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CAEEL1.277e-2742.366-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHIFL1.668e-2741.726-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_RAT1.668e-2745.036-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ECOLI2.179e-2741.726-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HUMAN2.845e-2745.036-phosphogluconate dehydrogenase, decarboxylating ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YD18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271213 ID=DY271213; Name=DY271213; organism=Citrus clementina; type=EST; length=968bp
GATCCTCAAATTTCCTAAATTCATTTCATTTTCAAGCATTCTTCGCAAGG
TTGAATTTTTCTCAGGTGACTAAAGATGGTCCAGACAAGAATTGGCCTAG
CTGGCCTTGCTGTCATGGGTCAAAATCTTGCTCTCAACATTGCTGAGAAA
GGATTCCCAATTTCTGTTTACAATCGGACGACCTCTAAAGTTGACGAGAC
TGTTGAACGAGCCAAACAAGAAGGGAATCTGCCCTTATGTGGCTTCCATG
ATCCTGAATCCTTTGTTCATTCAATCCAGAAACCTCGTGTTATAATCATG
CTTGTAAAAGCTGGTTCTCCTGTTGATCAAACAATTAAAACATTATCTGT
TTACATGGAGAAAGGAGATTGTATCATTGATGGTGGTAATGAATGGTATG
AGAATACTGAGAGGAGACAGAAAGCCGTGGCTGAATTGGGTCTGCTTTAT
CTGGCAACGGGAGTTTCAGGTGGTGAAAACGGTGCCCAGTTTGGAAATCC
TTTAATGGCTGAAGAATCCATTGAGGCAAACCACACACAAAAACAAACCT
TTCCAACCCGGGCAACAAGAGACCGCACCAGCTCCCGACGATCTTCCATA
AGTCGAGAAAACGGATACCAAGACACCATAACTGCCCACAACCACGCGCC
TCCGGCGGGCCGACCCTACCTACCCAAAAAGATTGGTAACTTAATAATAA
AATTCTTGAAATAAACAGAAAACCCTAAATCCTAATATACAGACCCACCA
CCATTACATACCACCCATCACCTTACCAAGACGCTACGGATTCTATAATG
TCTTCTTCCCCCATCAGACAAGAAAATAAAAGAAAACTCCAAGTACCAAT
GGGCCAAATGTGTCACGCTTTCCTACAAAACCCATCGCCCCTACCATGCC
ACCCGCCCCACAGACCCTCCTCGTCGCCGACTCACGGATAACAGATTAAC
TTACACTTATAATTCCAT
back to top