DY271222

Overview
NameDY271222
Unique NameDY271222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: MCFD_DICDI (Mitochondrial substrate carrier family protein D OS=Dictyostelium discoideum GN=mcfD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.829e-11
Identity = 51/218 (23.39%), Postives = 101/218 (46.33%), Query Frame = 1
Query:  100 FQRDLMAGAVMGGFVHTIVAPIERAKLLLQTQ-----ESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNIL-----------RNGNYQDGTSFMSGTSANFV--AGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEE 699
            + +   AGA+ GG +  ++ P +  K  LQ Q      +N+++      ++KG +D I +T++ +GI  +++G  S+  R  P  A+ F + +  +  L            N +  D +S  +G  A     AG  AG +  + IYP+D+  TR+          Q+      +T I++++GI   +RG  A++        + F  ++T + +L+ +
Sbjct:  121 YHKAAAAGAIAGGVISLLITPRDLVKSKLQVQCRPFGSTNVSL------QYKGPIDVIRQTIKRDGIKGMFKGIRSTFCRDIPGDAVYFVVYEFMKRKLLALSKNNNNNNNNNDNNDNSSPKAGVPAWVAIGAGGCAGMSFWMSIYPMDVVKTRIQTQPDHLPP-QYTSVLQTITKIYREEGISVFFRGFSATILRAFPTSAVNFLMYETTRNLLNSK 331          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.829e-11
Identity = 52/189 (27.51%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  100 FQRDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGL-PASLQGMVVHRGLYFG 663
            F ++  AGA+ G F   ++ P ER K LLQ Q++  A  GSG   + G LD + +  ++ GI S++RG G+++LR  P+ A   S+ +     L+     +G        A  +AG  AG     +  P D+  +RL       + +   G    L  + +++G R +++G  P  L+    +   +FG
Sbjct:  104 FIQNANAGALAGVFTTIVMVPGERIKCLLQVQQAGSA--GSG-VHYDGPLDVVKKLYKQGGISSIYRGTGATLLRDIPASAAYLSVYE----YLKKKFSGEGAQRTLSPGATLMAGGLAGIANWGVCIPADVLKSRLQT---APEGKYPDGIRGVLREVLREEGPRALFKGFWPVMLRAFPANAACFFG 282          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: GHC1_HUMAN (Mitochondrial glutamate carrier 1 OS=Homo sapiens GN=SLC25A22 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.155e-11
Identity = 61/227 (26.87%), Postives = 97/227 (42.73%), Query Frame = 1
Query:  112 LMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQF------------------------RGFCHFLT-TIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEV---LSEESKP 708
            L+ G + G    T V PI+ AK  LQ Q++       G+R +  M DC+ +TVR EG   ++RG   ++    P  A+  +  D +R+ L     +DG           +AG  AG   +I+  P+++   +L  D GR  A++                         R     LT  + +  GI G+Y+GL A+L   V    +YF  F  + ++    SEE  P
Sbjct:   12 LINGGIAGLIGVTCVFPIDLAKTRLQNQQN-------GQRVYTSMSDCLIKTVRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRHQLS----KDGQKLT--LLKEMLAGCGAGTCQVIVTTPMEMLKIQL-QDAGRIAAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTRDLLRSRGIAGLYKGLGATLLRDVPFSVVYFPLFANLNQLGRPASEEKSP 224          

HSP 2 Score: 26.5646 bits (57), Expect = 5.155e-11
Identity = 13/45 (28.89%), Postives = 24/45 (53.33%), Query Frame = 2
Query:  779 PLDTVPKKMM-MQSGWEQPWYHNPLECWPNLQRKKGVTSFSRGAF 910
            P D V  ++  +Q G  +  Y   L+C   + R +G ++F +GA+
Sbjct:  245 PCDVVKTRLQSLQRGVNEDTYSGILDCARKILRHEGPSAFLKGAY 289          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: MCP62_DANRE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Danio rerio GN=zgc:92090 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 54/185 (29.19%), Postives = 87/185 (47.03%), Query Frame = 1
Query:  109 DLMAGAVMGGFVHTIV-APIERAKLLLQTQES-----NLAIVGSG-----------RRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRG 612
            DL   +++ G V   V AP++  K+ LQ Q       N  + G+G           +  ++G L CI+  ++ EGI  L+RG G+ +LR  P  AL F    L+ N L   N  D +S        ++AG  AG  + +   P D+  +RL AD      R+++G  H +   ++ +GI   +RG
Sbjct:  103 DLTVASMLTGLVSVGVGAPVDLVKIRLQMQTQPVLAENFNLAGNGSVPLRSMGIQSQSFYRGPLHCISTVLQNEGIQGLYRGAGAMILRDIPGYALYFIPYTLFCNWL---NPDDNSS--PPPCCIWLAGGLAGSISWVTATPSDVVKSRLQADA--MHQRKYKGILHCIMQSYRTEGIHVFFRG 280          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: GHC1_PONAB (Mitochondrial glutamate carrier 1 OS=Pongo abelii GN=SLC25A22 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 8.686e-11
Identity = 60/227 (26.43%), Postives = 97/227 (42.73%), Query Frame = 1
Query:  112 LMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQF------------------------RGFCHFLT-TIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEV---LSEESKP 708
            L+ G + G    T V PI+ AK  LQ Q++       G+R +  M DC+ +T+R EG   ++RG   ++    P  A+  +  D +R+ L     +DG           +AG  AG   +I+  P+++   +L  D GR  A++                         R     LT  + +  GI G+Y+GL A+L   V    +YF  F  + ++    SEE  P
Sbjct:   12 LINGGIAGLIGVTCVFPIDLAKTRLQNQQN-------GQRMYTSMSDCLIKTIRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRHQLS----KDGQKLT--LLKEMLAGCGAGTCQVIVTTPMEMLKIQL-QDAGRIAAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTAIQLTRDLLRSRGIAGLYKGLGATLLRDVPLSVVYFPLFANLNQLGRPASEEKSP 224          

HSP 2 Score: 26.5646 bits (57), Expect = 8.686e-11
Identity = 13/45 (28.89%), Postives = 24/45 (53.33%), Query Frame = 2
Query:  779 PLDTVPKKMM-MQSGWEQPWYHNPLECWPNLQRKKGVTSFSRGAF 910
            P D V  ++  +Q G  +  Y   L+C   + R +G ++F +GA+
Sbjct:  245 PCDVVKTRLQSLQRGVNEDTYSGILDCARKILRHEGPSAFLKGAY 289          
The following BLAST results are available for this feature:
BLAST of DY271222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
MCFD_DICDI4.829e-1123.39Mitochondrial substrate carrier family protein D O... [more]
DIF1_CAEEL4.829e-1127.51Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 P... [more]
GHC1_HUMAN5.155e-1126.87Mitochondrial glutamate carrier 1 OS=Homo sapiens ... [more]
MCP62_DANRE8.236e-1129.19Putative mitochondrial carrier protein FLJ44862 ho... [more]
GHC1_PONAB8.686e-1126.43Mitochondrial glutamate carrier 1 OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YE03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271222 ID=DY271222; Name=DY271222; organism=Citrus clementina; type=EST; length=962bp
CAACGAGAGAAAATATTTTTTATTCAGAGAATGAGCAAAGATGACGATGG
GCCAGCAAGATTAACAAGCGGGTCGAGGTCGTACAAATGGGTCACCAACT
TTCAGCGTGATCTGATGGCGGGAGCTGTGATGGGGGGTTTTGTGCACACG
ATTGTGGCGCCAATCGAGAGGGCGAAGCTTCTGTTGCAGACCCAAGAGAG
CAATTTGGCTATTGTTGGGAGTGGACGGAGAAGATTCAAGGGCATGCTTG
ATTGTATTGCCCGTACTGTTAGAGAAGAAGGGATTTTATCTCTTTGGCGA
GGCAATGGCAGTAGTGTTCTTCGTTATTACCCTTCTGTTGCGCTTAACTT
CTCTCTTAAGGATCTTTATCGAAACATCTTAAGGAATGGCAACTATCAAG
ATGGTACTAGTTTCATGTCTGGTACATCTGCCAACTTTGTTGCTGGGGCT
GCAGCTGGTTGTACAACGTTGATCTTAATCTACCCACTTGATATCGCCCA
CACCCGTCTTGCTGCGGATGTTGGAAGAACTGATGCTCGTCAATTCCGAG
GCTTCTGCCATTTTCTGACAACCATATTCAAGAAAGATGGTATTCGAGGA
GTTTATAGAGGACTTCCTGCCTCTCTACAGGGGATGGTTGTTCACCGTGG
CCTATATTTTGGGGGCTTTGATACAATGAAGGAGGTACTGTCGGAAGAGT
CTAAACCTGAATTGGCATTGTGGAAACGTTGGGTAGTGCCTCACGCAGTC
ACGACATCTGCTGGGGTTGTTGTCCTATCCATTGGATACAGTTCCTAAGA
AGATGATGATGCAATCTGGCTGGGAACAACCATGGTACCATAACCCCCTG
GAATGCTGGCCGAACCTTCAAAGGAAAAAGGGGGTGACTTCCTTTTCCCG
TGGAGCCTTTTCCAACTTGTTCCGGAATACGGGCCCCGCCGCCATTTGGG
TTTTGTTAAAGA
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