DY271222

Overview
NameDY271222
Unique NameDY271222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 5.691e-20
Identity = 63/205 (30.73%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   76 RSYKWVTNFQRDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKD-GIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEV 687
            R + W+ +F    +AG + G    T VAP++R K+LLQ    +         +  G+   +    ++EG L L++GNG+ ++R +P  A+ F   + Y+ ++           +SG     +AG+ AG T +I  YPLD+   RLA  V       + G  H   TI+ K+ G  G YRGL  ++ GM  + G+ F  F T+K V
Sbjct:   32 RDFYWLRSF----LAGGIAGCCAKTTVAPLDRVKVLLQAHNHHY--------KHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITT------KLGISGHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQV--KGEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSV 216          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: EAAC_ARATH (Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.848e-20
Identity = 59/194 (30.41%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  118 AGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEE 699
            AGA+ G    T+ AP++R KLL+QT    L       ++  G ++ I    +EEG+   W+GN   V+R  P  A+     + Y+N+ +      G            AGA AG T+ +L YPLD+   RLA +       ++R       ++ + +GI   Y GL  SL G+  +  + F  FD +K+ L EE
Sbjct:   93 AGALAGAAAKTVTAPLDRIKLLMQTHGIRLG--QQSAKKAIGFIEAITLIAKEEGVKGYWKGNLPQVIRVLPYSAVQLLAYESYKNLFK------GKDDQLSVIGRLAAGACAGMTSTLLTYPLDVLRLRLAVE------PRYRTMSQVALSMLRDEGIASFYYGLGPSLVGIAPYIAVNFCIFDLVKKSLPEE 272          

HSP 2 Score: 25.0238 bits (53), Expect = 6.848e-20
Identity = 17/60 (28.33%), Postives = 28/60 (46.67%), Query Frame = 2
Query:  767 LLSYPLDTVPKKMMMQSGWEQPWYHNPLECWPNLQRKKGVTSFSRGAFSNLFRNTGPAAI 946
            L  YPLDTV ++M M+     P+   P E +  +  + G+    RG   N  +    ++I
Sbjct:  293 LTCYPLDTVRRQMQMRG---TPYKSIP-EAFAGIIDRDGLIGLYRGFLPNALKTLPNSSI 348          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: S2542_MOUSE (Solute carrier family 25 member 42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.432e-20
Identity = 68/228 (29.82%), Postives = 111/228 (48.68%), Query Frame = 1
Query:   55 ARLTSGSRSYKWVTNFQRDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEES-KPELALWKRWV 735
            A   S  R ++ V +    L++GA+ G    T VAP++R K++ Q        V S R   K     +  T   EG LSLWRGN ++++R  P  A+ FS  + Y+ IL  G+Y              +AGA AG T   L YPLD+   R+A     T    +    H    I +++G++ +Y G   ++ G++ + GL F  ++++K +  E S +P+   ++R V
Sbjct:   21 AGAVSSKRDHRQVLS---SLLSGALAGALAKTAVAPLDRTKIIFQ--------VSSKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRIL--GHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVRARMAV----TPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMV 231          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.864e-20
Identity = 60/192 (31.25%), Postives = 97/192 (50.52%), Query Frame = 1
Query:  106 RDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMK 681
            R L+AG V G    T  AP++R K+++Q   S    +  G R+           V+E GI SLWRGNG++V++  P  A+ F   + Y+ +L     ++G     GT   F++G+ AG T    IYP+++  TRLA  V +T   Q+ G       I K +G    Y+G   +L G++ + G+    ++ +K
Sbjct:  196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGSKSMNIFGGFRQM----------VKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLT----EEGQKL--GTFERFISGSMAGATAQTFIYPMEVLKTRLA--VAKTG--QYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLK 367          

HSP 2 Score: 23.8682 bits (50), Expect = 8.864e-20
Identity = 15/53 (28.30%), Postives = 24/53 (45.28%), Query Frame = 2
Query:  767 LLSYPLDTVPKKMMMQSGWEQPWYHNPLECWPNLQRKKGVTSFSRGAFSNLFR 925
            L SYPL  V  +M  Q+  E     + +  +  +  K+GV+   RG   N  +
Sbjct:  399 LASYPLALVRTRMQAQATVEGAPQLSMVGLFQRIVSKEGVSGLYRGITPNFMK 451          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.707e-20
Identity = 57/191 (29.84%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  112 LMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKE 684
            L++G V G    T  +P+ER K+L Q    NL    + + + +G++  +      EG +  ++GNG++V+R  P  A+ F   + Y+N L N N Q   +    T  N   G AAG T+L+  YPLD+  +RL   V      ++ G       I +++G+ G+Y+GL AS  G+  +  + F  ++ +K+
Sbjct:  142 LLSGGVAGAVSRTCTSPLERLKILNQVGHMNLE-QNAPKYKGRGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLT----TYENLFVGGAAGVTSLLCTYPLDLIRSRLTVQV---FGNKYNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKK 324          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: S2542_RAT (Solute carrier family 25 member 42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.268e-19
Identity = 64/209 (30.62%), Postives = 104/209 (49.76%), Query Frame = 1
Query:  112 LMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEES-KPELALWKRWV 735
            L++GA+ G    T VAP++R K++ Q        V S R   K     +  T   EG LSLWRGN ++++R  P  A+ FS  + Y+ IL  G+Y              +AGA AG T   L YPLD+   R+A     T    +    H    I +++G++ +Y G   ++ G++ + GL F  ++++K +  E S +P+   ++R V
Sbjct:   37 LLSGALAGALAKTAVAPLDRTKIIFQ--------VSSKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRIL--GHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVRARMAV----TPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMV 231          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: MCFP_DICDI (Mitochondrial substrate carrier family protein P OS=Dictyostelium discoideum GN=mcfP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.268e-19
Identity = 56/191 (29.32%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  115 MAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEV 687
            ++G + G    + VAP+ER K+L Q +    ++          +   + + V  EGI  LWRGN +++LR +P  A+ F   +  +N L         +  S +   F+AG+AAG   +   YPLD+   RLA ++ +   +      H L + F KDG++G+YRG+  +L G++ + G+ F  F+ +K +
Sbjct:   19 LSGGLAGVTAKSAVAPLERVKILYQIKSELYSL--------NSVYGSMLKIVENEGIKGLWRGNSATILRVFPYAAVQFLSYETIKNHL--------VADKSSSFQIFLAGSAAGGIAVCATYPLDLLRARLAIEIHKKPTKPH----HLLKSTFTKDGVKGIYRGIQPTLIGILPYGGISFSTFEFLKRI 189          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.656e-19
Identity = 57/192 (29.69%), Postives = 101/192 (52.60%), Query Frame = 1
Query:  106 RDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMK 681
            + L+AG + G    T  AP++R K+++Q           G +    ++  + + V+E GI SLWRGNG +V++  P  A+ F   + Y+ +  +       S   GT+  F+AG+ AG T    IYP+++  TRLA  VG+T   Q+ G       I +++G+R  Y+G   ++ G++ + G+    ++T+K
Sbjct:  196 KQLLAGGMAGAVSRTGTAPLDRLKVMMQVH---------GSKGNANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTS------ESGKLGTAERFIAGSLAGATAQTSIYPMEVLKTRLA--VGKTG--QYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLK 368          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.824e-19
Identity = 60/192 (31.25%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  106 RDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMK 681
            R L+AG   G    T  AP +R K+ LQ        V S +    G++ C+     E GI S WRGNG +V++  P  A+ F   D  + +++     +  S    T     AG+AAG  +   IYP+++  TRLA    R   +  RG  HF   ++ K+GIR  Y+G   +L G++ + G+    ++T+K
Sbjct:  250 RHLVAGGAAGAVSRTCTAPFDRIKVYLQ--------VNSSKTNRLGVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEIS----TFERLCAGSAAGAISQSTIYPMEVMKTRLAL---RKTGQLDRGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGIDLAIYETLK 426          
BLAST of DY271222 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.817e-19
Identity = 57/192 (29.69%), Postives = 100/192 (52.08%), Query Frame = 1
Query:  106 RDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNILRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMK 681
            + L+AG + G    T  AP++R K+++Q           G +    ++  + + V+E G+ SLWRGNG +V++  P  A+ F   + Y+ +  +       S   GT+  F+AG+ AG T    IYP+++  TRLA  VG+T   Q+ G       I +K+GI   Y+G   ++ G++ + G+    ++T+K
Sbjct:  196 KHLLAGGMAGAVSRTGTAPLDRLKVMMQVH---------GTKGNSNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTS------ESGKLGTAERFIAGSLAGATAQTSIYPMEVLKTRLA--VGKTG--QYSGMFDCAKKIMQKEGILAFYKGYIPNILGIIPYAGIDLAIYETLK 368          
The following BLAST results are available for this feature:
BLAST of DY271222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GDC_HUMAN5.691e-2030.73Graves disease carrier protein OS=Homo sapiens GN=... [more]
EAAC_ARATH6.848e-2030.41Probable envelope ADP,ATP carrier protein, chlorop... [more]
S2542_MOUSE7.432e-2029.82Solute carrier family 25 member 42 OS=Mus musculus... [more]
SCMC1_MOUSE8.864e-2031.25Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFB_DICDI9.707e-2029.84Mitochondrial substrate carrier family protein B O... [more]
S2542_RAT1.268e-1930.62Solute carrier family 25 member 42 OS=Rattus norve... [more]
MCFP_DICDI1.268e-1929.32Mitochondrial substrate carrier family protein P O... [more]
SCMC1_XENTR1.656e-1929.69Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC2_CAEEL2.824e-1931.25Putative calcium-binding mitochondrial carrier F55... [more]
SCM1A_XENLA4.817e-1929.69Calcium-binding mitochondrial carrier protein SCaM... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YE03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271222 ID=DY271222; Name=DY271222; organism=Citrus clementina; type=EST; length=962bp
CAACGAGAGAAAATATTTTTTATTCAGAGAATGAGCAAAGATGACGATGG
GCCAGCAAGATTAACAAGCGGGTCGAGGTCGTACAAATGGGTCACCAACT
TTCAGCGTGATCTGATGGCGGGAGCTGTGATGGGGGGTTTTGTGCACACG
ATTGTGGCGCCAATCGAGAGGGCGAAGCTTCTGTTGCAGACCCAAGAGAG
CAATTTGGCTATTGTTGGGAGTGGACGGAGAAGATTCAAGGGCATGCTTG
ATTGTATTGCCCGTACTGTTAGAGAAGAAGGGATTTTATCTCTTTGGCGA
GGCAATGGCAGTAGTGTTCTTCGTTATTACCCTTCTGTTGCGCTTAACTT
CTCTCTTAAGGATCTTTATCGAAACATCTTAAGGAATGGCAACTATCAAG
ATGGTACTAGTTTCATGTCTGGTACATCTGCCAACTTTGTTGCTGGGGCT
GCAGCTGGTTGTACAACGTTGATCTTAATCTACCCACTTGATATCGCCCA
CACCCGTCTTGCTGCGGATGTTGGAAGAACTGATGCTCGTCAATTCCGAG
GCTTCTGCCATTTTCTGACAACCATATTCAAGAAAGATGGTATTCGAGGA
GTTTATAGAGGACTTCCTGCCTCTCTACAGGGGATGGTTGTTCACCGTGG
CCTATATTTTGGGGGCTTTGATACAATGAAGGAGGTACTGTCGGAAGAGT
CTAAACCTGAATTGGCATTGTGGAAACGTTGGGTAGTGCCTCACGCAGTC
ACGACATCTGCTGGGGTTGTTGTCCTATCCATTGGATACAGTTCCTAAGA
AGATGATGATGCAATCTGGCTGGGAACAACCATGGTACCATAACCCCCTG
GAATGCTGGCCGAACCTTCAAAGGAAAAAGGGGGTGACTTCCTTTTCCCG
TGGAGCCTTTTCCAACTTGTTCCGGAATACGGGCCCCGCCGCCATTTGGG
TTTTGTTAAAGA
back to top