DY271284

Overview
NameDY271284
Unique NameDY271284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1077
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.933e-17
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLL 361
            QET+S N VV+FSKT C +C   K+LF  + V +K +EL+    G+  Q AL + TG++TVP +F+ G  IGG   T  LH+E K  PL+
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.183e-16
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   62 EDTEMALPNA-QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLL 361
            E+ E A  N  QET+S N VV+FSKT C +C   K+LF+ + V +K +EL+    G+  Q AL + TG +TVP +F+ G  IGG   T  LH+E K  PL+
Sbjct:   47 ENLETAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.544e-16
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 2
Query:   86 NAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLT 364
            + + T++ N VV++SK++C + + VK LF+++GV    IEL++  + G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+ +   +L+
Sbjct:   62 SVKRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLS 155          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.017e-16
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLL 361
            QET+S+N VV+FSK+ C +C   K++F  + V +K +EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+E K  PL+
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.494e-16
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKES-DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHRE 340
            ++TV+ N+VV++SKT+C +C  VK LF++LGV    +EL++    G  +Q  L   TGQ TVPNVF+ GKHIGGC  T  L+R+
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRK 157          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.494e-16
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   98 TVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHRE 340
            TV+ N VVV+SKT+C +   VK LF+ L V    +EL++  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNK 162          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.307e-15
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHR 337
            ++ +  N V++FSK++CP    VKELF  LGV +  +EL++  DG+ +Q  L E + QKTVPN+F+   H+GGC  T   H+
Sbjct:  114 RDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQ 195          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.307e-15
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATG 373
            ++T+SS+ +V+FSK++CP+C   K +F++L      +EL++  DG  IQ+AL E  G++TVP VFI GKH+GG   T   +   +   LL  +G
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.466e-14
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  101 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYST 322
            +  + VV+FSK++CP    VKELF  LGV    +EL++  DG+ +Q  L+E T QKTVPN+F+   H+GGC  T
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 247          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.220e-14
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGG 310
            Q  + SN +V+FSK++CP+C+  K +F QL      +EL++  DG  IQ  L E+ G++TVP VF+ GKHIGG
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGG 110          
The following BLAST results are available for this feature:
BLAST of DY271284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GLRX2_HUMAN6.933e-1745.56Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GLRX2_PONAB1.183e-1644.55Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GRS10_ORYSJ1.544e-1644.68Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GLRX2_RAT2.017e-1644.44Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GRXC5_ARATH4.494e-1648.81Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRS12_ARATH4.494e-1653.66Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
TRXR3_MOUSE1.307e-1542.68Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRXC4_ARATH1.307e-1540.43Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
TRXR3_HUMAN2.466e-1447.30Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC3_ARATH3.220e-1446.58Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YH10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271284 ID=DY271284; Name=DY271284; organism=Citrus clementina; type=EST; length=1077bp
GTAAAGCCACCCTTTATGGGAAGCTTATTTAGGGTTTGTGAGATTTCGAA
TCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAATGCCCAGGAAACC
GTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTTCTG
CGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCA
TTGAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCT
GAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACA
CATTGGTGGCTGCTATTCCACTACTGCACTGCACAGGGAATGGAAGCCCG
GTCCTCTGCTCACTGCAACTGGAGCTGTTAGCAACTACAGTTGCTAGATG
GAAGGATCATGTCTCCCCCGCTTATTCCAATACTAGTTCTTCGAATGGGT
TCCGTACTGACGTCTCCCGCACGACATATCCTTGCAAACAAGTCAGTCCG
AACGAAATAACAACGCAATTACATAATATGCTTACTGATAATTTCACTTA
AAACAAAAATACCCACCACAAAACACACCCGCCAACCCCAAACCCACATA
CTTCACCAACCCTCCGACAAATCTCCCCCACTAACAATCCCATACCTAGA
ATATTAAAACAACGTAAAAACCAGACAACTACAATAGTACCCAACCTCTC
AATTAGCCCTTCAGTTTATATTCACCCTTACTACCCTTCATTTATAATGT
GTCTTAATTACATTATTGATTCCTTATGGTTCTTTCTGGTGGTCCGCATA
AGCGTACATCATAACATCTCTTACAATGTATCCCAATCACCACATTAGCA
TATCTTTTCAATCCATTCGCTCCTCCTCCGCTCTGGACCTTCAGGGTCCA
GCTTTCTGGGCTTTATACTTCTCTTCACCCCCGCACCATACATCCACAAC
ACTATAATCACACACATCAATCAAACTCTCCTGCTCTATAAGATACTTAT
ACTCCCTAGTCTACCAACGACTTCAAACCACAAAGAACGCATCAACCTAA
CACCAACACCCAGACACACACTCACAC
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