DY271284

Overview
NameDY271284
Unique NameDY271284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1077
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.598e-13
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 2
Query:   41 RFRIKDKEDTEMALPNAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFK---AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLL 361
            RF    K  ++  + + ++ +    V V +KT+CP+C  ++  LFQ+L V       +EL++ S+GS+IQ AL E +GQKTVPNV+I GKHIGG      L +  K   +L
Sbjct:   28 RFLSTPKMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.087e-13
Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFK--AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLL 361
            + TV ++ VV+FSK++CP+C   K +F++L +  +   +EL++  DG +IQ AL++  G++TVP VF+ GKH+GG   T   +   K   LL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.036e-12
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   68 TEMALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGG 310
            T +A    ++ +S+N V VFSK+FCPFC + K    +    +KA EL+K  +GSDIQ+ L E T Q TVP++F   + IGG
Sbjct:    2 TSIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGG 82          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.767e-12
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALH 334
            Q  + SN + +FSKT+CP+ +  K +F+ L      +EL+   DG +IQS L +  G+ TVP VF+ G+H+GG   T   H
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAH 115          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.014e-12
Identity = 34/85 (40.00%), Postives = 57/85 (67.06%), Query Frame = 2
Query:   68 TEMALPNAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFKAI---ELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGG 310
            ++  + + ++ ++ N + V SKT+CP+C  ++  LF++L V    +   +LN   +G+DIQ+AL E  GQ+TVPN++I GKHIGG
Sbjct:    3 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGG 87          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.145e-11
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:   80 LPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAV 379
            + N Q+ +S  SVV+FSK  C    ++K LF  LGV     EL++ S G +I+ ALA+     TVP VFIGG+ +GG     +LH      P+L   GA+
Sbjct:    1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.696e-11
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:   80 LPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAV 379
            + N Q+ +S  SVV+FSK  C    ++K LF   GV     EL++ + G +I+ ALA+     TVP VFIGG+ +GG     +LH      P+L   GA+
Sbjct:    1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.696e-11
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  101 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHRE 340
            V+ N VVVF+K++CP+C + +++     +  +  +++  ++G +IQS L + TGQ+TVPN+FI  KH+GG     AL ++
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKK 91          
The following BLAST results are available for this feature:
BLAST of DY271284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GLRX2_YEAST1.598e-1338.74Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GRXC8_ORYSJ2.087e-1339.13Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GLRX2_SCHPO1.036e-1244.44Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GRXS6_ORYSJ1.767e-1239.51Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX1_YEAST3.014e-1240.00Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GRXS3_ARATH1.145e-1140.00Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH9.696e-1138.00Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GLRX1_SCHPO9.696e-1137.50Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YH10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271284 ID=DY271284; Name=DY271284; organism=Citrus clementina; type=EST; length=1077bp
GTAAAGCCACCCTTTATGGGAAGCTTATTTAGGGTTTGTGAGATTTCGAA
TCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAATGCCCAGGAAACC
GTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTTCTG
CGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCA
TTGAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCT
GAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACA
CATTGGTGGCTGCTATTCCACTACTGCACTGCACAGGGAATGGAAGCCCG
GTCCTCTGCTCACTGCAACTGGAGCTGTTAGCAACTACAGTTGCTAGATG
GAAGGATCATGTCTCCCCCGCTTATTCCAATACTAGTTCTTCGAATGGGT
TCCGTACTGACGTCTCCCGCACGACATATCCTTGCAAACAAGTCAGTCCG
AACGAAATAACAACGCAATTACATAATATGCTTACTGATAATTTCACTTA
AAACAAAAATACCCACCACAAAACACACCCGCCAACCCCAAACCCACATA
CTTCACCAACCCTCCGACAAATCTCCCCCACTAACAATCCCATACCTAGA
ATATTAAAACAACGTAAAAACCAGACAACTACAATAGTACCCAACCTCTC
AATTAGCCCTTCAGTTTATATTCACCCTTACTACCCTTCATTTATAATGT
GTCTTAATTACATTATTGATTCCTTATGGTTCTTTCTGGTGGTCCGCATA
AGCGTACATCATAACATCTCTTACAATGTATCCCAATCACCACATTAGCA
TATCTTTTCAATCCATTCGCTCCTCCTCCGCTCTGGACCTTCAGGGTCCA
GCTTTCTGGGCTTTATACTTCTCTTCACCCCCGCACCATACATCCACAAC
ACTATAATCACACACATCAATCAAACTCTCCTGCTCTATAAGATACTTAT
ACTCCCTAGTCTACCAACGACTTCAAACCACAAAGAACGCATCAACCTAA
CACCAACACCCAGACACACACTCACAC
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