DY271294

Overview
NameDY271294
Unique NameDY271294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length978
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.332e-48
Identity = 102/239 (42.68%), Postives = 145/239 (60.67%), Query Frame = 3
Query:   78 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            AR+ F+GGN+KCNG+ + +K  V+ +  A                       +       +AAQN ++   GA+TGE S EML ++ +  VI+GHSERR ++ E+++    K   AL +G+ VI CVGETL++R++  T+ V   Q +A+ +++      W  VV+AYEPVW+IGTG VATP QA+EVH  LRKW  + V AE A   RIIY GS NG+NC++L   P ++GFLVGGAS
Sbjct:    3 ARRPFIGGNFKCNGSLDFIKSHVAAI-AAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGAS 240          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.080e-46
Identity = 114/241 (47.30%), Postives = 142/241 (58.92%), Query Frame = 3
Query:   81 RKFFVGGNWKCN----GTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            RK FV GNWK N    G      +I+  L +EA                      +S ++    +AAQNC+    GA+TGE+SA ML N    +VILGHSERR   NE+++ V  KV  ALS  L VI CVGETLEQRESG T +VV  Q +   + ++  D  +VV+AYEPVWAIGTGK ATP QAQEVHA +R  +KD    EVA   RI Y GSV  +N KEL   P+++G L+GGAS
Sbjct:    2 RKKFVAGNWKMNKDLLGAVSLATEILQLLGDEAPTCEVAIAPTFLCQQAVFQVIDESAIK----LAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGAS 238          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.395e-44
Identity = 99/236 (41.95%), Postives = 134/236 (56.78%), Query Frame = 3
Query:   81 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            R+ F+ GNWK + TS E   +V  L  A                       +L +SD  VAAQNC+    GAFTGEVS  +L +    +VI+GHSERR L  ES+ F+  KV   +  GL  I C+GETLE+RE+  T  V+  Q +   E +  +  + +V+AYEPVWAIGTGK AT +QAQ+ H+ +R  + D   ++VA   RI+Y GSV   N   L  QP+++G LVGGAS
Sbjct:    2 RRPFIAGNWKLHKTSAEAAALVGELKGALSDVVDRDIVVAPVFTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSVKPGNVDGLLQQPDIDGALVGGAS 237          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.395e-44
Identity = 101/236 (42.80%), Postives = 138/236 (58.47%), Query Frame = 3
Query:   81 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+Y GS   +N KEL A P+V+G L+GGA+
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAA 237          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.395e-44
Identity = 101/236 (42.80%), Postives = 138/236 (58.47%), Query Frame = 3
Query:   81 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+Y GS   +N KEL A P+V+G L+GGA+
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAA 237          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.877e-44
Identity = 103/235 (43.83%), Postives = 132/235 (56.17%), Query Frame = 3
Query:   81 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            RK  V GNWK N T  E  ++ S + +                         ++  +  H+AAQNC     GAFTGEVS  ML      +VI+GHSERR    ++N  V  KV  ALS GL VI CVGETL++RE G T  VV  Q K   E +++  ++V+AYEPVWAIGTGK A+  QAQEVHA +R  +    S   AA  RI Y GSV  +N +EL A P+++G L+GGAS
Sbjct:    2 RKKIVVGNWKMNKTIAEAVELSSAIIDQLGEVSASCEVGIAPAFPALSGVHGVISGTGIHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGAS 236          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.685e-43
Identity = 100/235 (42.55%), Postives = 131/235 (55.74%), Query Frame = 3
Query:   81 RKFFVGGNWKCNGT-SEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            R+  V GNWK N T +E ++   +   +                       K++  S   +AAQNC     GAFTGEVS  ML      +VILGHSERR L  E+N+ V  KV  AL+ GL+VI CVGETL++RE+G T  +V  Q       +S+   +V+AYEPVWAIGTGK AT  QAQ+VHA +R  ++       A   RI Y GSV  +N  EL A P+++G L+GGAS
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLADVSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGAS 236          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.753e-43
Identity = 99/236 (41.95%), Postives = 136/236 (57.63%), Query Frame = 3
Query:   81 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA   E+   + +KV  AL+ GL  I C+GE LE+RE+     VVA Q +++      ++  ++LAYEPVWAIGTGK A+P QAQE+HA +R  + D    E+A +T I+Y GS   +N KEL + P+V+G L+GGA+
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAA 237          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 175.637 bits (444), Expect = 3.753e-43
Identity = 100/238 (42.02%), Postives = 132/238 (55.46%), Query Frame = 3
Query:   75 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            + RK  + GNWK + T  E KK VS L                         + L   +  + AQN +    GAFTGE+S  ML  + + +VI+GHSERR +  E ++F+  KV   L +G+  I CVGETLE+RE G T  VV +Q +     +   +   VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +    E A S RI+Y GS+   N   L  Q +++G LVGGAS
Sbjct:  400 ITRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGAS 637          
BLAST of DY271294 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.402e-43
Identity = 99/236 (41.95%), Postives = 136/236 (57.63%), Query Frame = 3
Query:   81 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYRGSVNGANCKELAAQPEVNGFLVGGAS 782
            RK  V GNWK N   +E   +   LNEA                        ++ ++   V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA  +E+ + + +KV  AL+  LK I C+GE LE+RE+     VVA Q  ++      ++  ++LAYEPVWAIGTGK AT  QAQE+HA +R  + D    EVA +T I+Y GS   +N KEL A P+V+G L+GGA+
Sbjct:    2 RKNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAA 237          
The following BLAST results are available for this feature:
BLAST of DY271294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPI1_GIALA1.332e-4842.68Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_CHLT38.080e-4647.30Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_PELCD3.395e-4441.95Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_BACFR3.395e-4442.80Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN3.395e-4442.80Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_PROA29.877e-4443.83Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLP81.685e-4342.55Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_BACTN3.753e-4341.95Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
PGKT_THEMA3.753e-4342.02Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_BACV86.402e-4341.95Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YH22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271294 ID=DY271294; Name=DY271294; organism=Citrus clementina; type=EST; length=978bp
CACAAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAA
ACCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGG
CAACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTA
CATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTA
AGCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGA
TTTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTA
CCGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTC
ATTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTT
TGTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTG
CTTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCT
GTTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGA
CAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGG
TTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGG
CTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCCACTAGAATCATCTA
CCGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTG
AAGTAAATGGATTTTTGGTTGGTGGAGCTTCCCCAAAGCCGGAATCCATC
GAAATTATCAAGTCTGCCAAATGAAAAAAATTGAAAGTTAAAACCAGCCA
CCCCGGCTTGGCGATGCCTGCATTTTCCCTGGTTAGCTTTCGGAAAAAAA
GCTTGTAATTTTTGGGGGCTGTTAAGTGTAACCAACGCCTTTTCAAGAAA
AAAAGTTAAATTTTCAAATTGTAAAAAA
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