DY271306

Overview
NameDY271306
Unique NameDY271306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_BRUA2 (60 kDa chaperonin OS=Brucella abortus (strain 2308) GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 47/155 (30.32%), Postives = 82/155 (52.90%), Query Frame = 2 
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAV-DAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            G + VI++   +  IT   ++V     +E+ F   GA+ ++E  +   +    G     V+  A+      AV A ++P D+  G+ LAV + VAE+L+   + +T EE++QVGT +ANG   IG++ A A Q+VG  G   + +   +++E  V
Sbjct:   35 GRNVVIEKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEV 189
[Close]
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_BRUA1 (60 kDa chaperonin OS=Brucella abortus (strain S19) GN=groL PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 47/155 (30.32%), Postives = 82/155 (52.90%), Query Frame = 2 
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAV-DAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            G + VI++   +  IT   ++V     +E+ F   GA+ ++E  +   +    G     V+  A+      AV A ++P D+  G+ LAV + VAE+L+   + +T EE++QVGT +ANG   IG++ A A Q+VG  G   + +   +++E  V
Sbjct:   35 GRNVVIEKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEV 189
The following BLAST results are available for this feature:
BLAST of DY271306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CH60_BRUA28.155e-1130.3260 kDa chaperonin OS=Brucella abortus (strain 2308... [more]
CH60_BRUA18.155e-1130.3260 kDa chaperonin OS=Brucella abortus (strain S19)... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YI14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271306 ID=DY271306; Name=DY271306; organism=Citrus clementina; type=EST; length=955bp
TCTCAGTTTATAATCTCTATTCATCTATCGTCAAAAATAAATTAATACGT
AAGAGAAAAAAAAATTCAGCAAACTCAACTCTTTTATTCTCTTTGACATC
CACGTAGTTATGTTACGGTTAGCTTCTAGGATCGCTTCCAACGTCAGGTT
GCCTAATAACAACAGATTAAGTTGGAGAAGAAACTATGCTCATGCTGGCA
AAGATAATAACTATGGCGCTGATGATGTTATCCAGAGGCCCATGTTGAGT
GAATTGATAACTAATAAGGATCTCAATGTTATTGAAGAAAGTTTTCTGGC
TAGTGGTGCAAGGTTTGTGAAGGAAGCTCTAAACCCTATATGCAATCCAG
ATGAACATGGATTTAAATATTGGGGTGTCATGAGTTCAGCTGTAGCTTAT
AGATTACTCTTAGCAGTGAAAGCTAAATTGGATCCCAAGGATATAGATGT
GGGTCTTCGTTTGGCTGTTGATGCAGTTGCCGAAATCTTACGCTGCAGAG
CACAGGCCAGCACATTTGAAGAAATTTCCCAGGTTGGAACCGCAGCAGCA
AATGGGAACAAAATAATTGGTGAGCTTGCTGCCATGGCTTGTCAGAGAGT
TGGAGAACATGGTCATTATATCATCAGGGATAATGGAAAATCAAAGAGTG
AAAGTAGAGTTTTTTAATTTTATGAAACTAAAATGGCGTCCCGTGTCCTC
TTACTTCACCAATCAAAAGGCTAAAGATTGTGTTTTGGAAAATCCTTTCT
TTTTAATCCTTGAGAACATGATTGTGAGCCAGAATATTGTTGAGCAAGCA
ATTGCACGGGCGGATTCCAGACCTTTATTGATTGGTGGTGAGGATGGTTG
AAAAAAACTGAAAGGTTCCCTTATTCGGGGCAAAACTGGTCTCCAAAACA
AGGTTTCTATGGCCAAACCCAGGAAAACCAACATGAAAAAAAAACAAAGG
CCTCA
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