DY271323

Overview
NameDY271323
Unique NameDY271323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1061
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.842e-31
Identity = 80/217 (36.87%), Postives = 123/217 (56.68%), Query Frame = 2
Query:  119 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 766
            Q  D  ATK N               F D+ LK +LLR I + GFE PS +Q E IP A+ G D++ +AK+G GKT  F + TL++ +P    + A++L  TRELA Q     +  S YL  I+V V  GG +++   D+++   P  ++VGTPGRIL LA+     LK+    ++DE DK+L S++ +  ++E+ +  P  +Q++MFSAT    ++
Sbjct:  144 QTEDVTATKGNE--------------FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYL-KIEVMVTTGGTSLR--DDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLL-SVEFQPSIEELIQFLPESRQILMFSATFPVTVK 342          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.324e-31
Identity = 80/191 (41.88%), Postives = 112/191 (58.64%), Query Frame = 2
Query:  212 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL+L  TRELA QI         ++ +I+     GG N++     L+ E PQ+VVGTPGR+  + + + L   N++ FILDE D+ML S      + +IF++ P   QV++ SAT+ +++  V  KF
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTNVREDMKALQ-EGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKF 219          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.324e-31
Identity = 76/193 (39.38%), Postives = 112/193 (58.03%), Query Frame = 2
Query:  191 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 766
            + F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +P   ++ AL++  TRELA Q          +   +   V  GG N++   D+L+ NE   ++VGTPGR+L LA  K   L     F++DE DKML S D +  ++++    P   Q ++FSAT    ++
Sbjct:   31 NSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHC-GVSCMVTTGGTNLR--DDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKML-SRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVK 219          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.260e-31
Identity = 78/196 (39.80%), Postives = 115/196 (58.67%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQK 781
            F +F LK +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+++ + P  IVVGTPGRIL LA      L     FI+DE DK+L S++    ++++ +  P D+QVM+FSAT    ++    K
Sbjct:   44 FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR--DDIIRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL-SIEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFSDK 235          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.260e-31
Identity = 78/196 (39.80%), Postives = 116/196 (59.18%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQK 781
            F DF LK +LL  I ++GFE PS +Q E IP A++G D++ +AK+G GKTA FV+  L++  P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+++ + P  IVVGTPGRIL LA  +   L     FI+DE DK+L S++    ++++ +  P D+QVM+FSAT    ++    K
Sbjct:   13 FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR--DDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLL-SIEFTPVIEQLLRFHPKDRQVMLFSATFPISVKDFSDK 204          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.409e-30
Identity = 78/191 (40.84%), Postives = 111/191 (58.12%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 766
            F DF LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   I   V  GG N++   D+L+ NE   I+VGTPGR+L LA  K   L     FI+DE DKML S D +  +++I    P + Q ++FSAT    ++
Sbjct:   36 FEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKML-SRDFKSIIEQILVFLPKNHQSLLFSATFPLSVK 222          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.409e-30
Identity = 78/196 (39.80%), Postives = 116/196 (59.18%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQK 781
            F DF LK ELL  I ++GFE PS +Q E IP A+ G DV+ +AK+G GKTA F++ +LQQ +P   ++ AL+L  TRELA Q          +L  I+  V  GG ++K   D+L+ N+   ++VGTPGR+L LA      L     F++DE DKML S + +  +++I +  P ++Q ++FSAT    ++    K
Sbjct:   32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHL-GIQCMVTTGGTSLK--DDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKML-SREFKGIIEQILEFFPKNRQSLLFSATFPLAVKSFMDK 223          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.409e-30
Identity = 78/191 (40.84%), Postives = 112/191 (58.64%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 766
            F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +P   ++ AL++  TRELA Q          +   I   V  GG N++   D+++ NE   I+VGTPGR+L LA  +   L     FI+DE DKML S D +   ++I    P  +Q+++FSAT    ++
Sbjct:   38 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKML-SRDFKVLAEQILGFLPERRQLLLFSATFPVTVK 224          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.840e-30
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 2
Query:  191 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 748
            S F DF L+ ELL  I  +GFE PS +Q + IP A+ G D++ +AK+G GKTA F++ TL +   +   + AL+L  TRELA Q     +    ++P+++V +  GG  ++   D+L+ + P  I+VGTPGRIL L      SL     F++DE DK+L S D    +++   + P ++QVM+FSAT
Sbjct:   36 SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLR--DDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLL-SEDFMPVIEQTLALCPQERQVMLFSAT 219          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.840e-30
Identity = 81/209 (38.76%), Postives = 117/209 (55.98%), Query Frame = 2
Query:  125 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 748
            P    T+     A KG        F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++T P   +  AL+L  TRELA Q     +    +L  I V V  GG  ++   D+++ ++   I+VGTPGRIL LA      L     F++DE DK+L S +    ++++    P D+QVM+FSAT
Sbjct:   31 PKDTRTQTEDVTATKGLE------FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGLQ--DDIIRLSDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSAT 229          
The following BLAST results are available for this feature:
BLAST of DY271323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH6_ARATH4.842e-3136.87DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
IF4A_ASPFU6.324e-3141.88ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
DHH1_CANGA6.324e-3139.38ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DHH1_GIBZE8.260e-3139.80ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
DHH1_CHAGB8.260e-3139.80ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DHH1_VANPO1.409e-3040.84ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_PICST1.409e-3039.80ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_KLULA1.409e-3040.84ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DHH1_CRYNE1.840e-3039.57ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
DHH1_COCIM1.840e-3038.76ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271323 ID=DY271323; Name=DY271323; organism=Citrus clementina; type=EST; length=1061bp
CTCTCGCCAAACTCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCCAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATCTCTTGACATGAGAAGAGATGTGCAAGAGATT
TTCAAGATGACTCCTCATGACAAGCAAGTAATGATGTTTTCCGCAACACT
CAGCAAGGAAATCCGCCCAGTCTGCCAGAAATTTTATGCAAGATCCAATG
GAAATTTTATGTGGATGAACAAGGCAAGTTGACTCCTTCTGGTCTTGGTC
CGCCTTCATTAAATTGAGTGGGCTGGAAAAAAACCGAAATTGGATGATCC
CCTTGAGCCTTGGAATTTAATCCAGTTGTTATTCTTGGTCAAAGGGGTTA
CCCAAGCACGGGAGTTAAAAAGTTTATTGGTAAAAAGGATTTTTCCTCTC
ATTTGCCTTCCCTTTGGGGCTGGGCCACCAAAAAAAGGGTTGACCCGGTT
CAAAAGGGTTC
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