DY271323

Overview
NameDY271323
Unique NameDY271323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1061
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.034e-29
Identity = 83/196 (42.35%), Postives = 107/196 (54.59%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML S   +  + EIF+      QV++ SAT+  ++  V +KF
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 228          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.034e-29
Identity = 83/196 (42.35%), Postives = 107/196 (54.59%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML S   +  + EIF+      QV++ SAT+  ++  V +KF
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 228          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.034e-29
Identity = 83/196 (42.35%), Postives = 107/196 (54.59%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML S   +  + EIF+      QV++ SAT+  ++  V +KF
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 228          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.034e-29
Identity = 83/196 (42.35%), Postives = 107/196 (54.59%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML S   +  + EIF+      QV++ SAT+  ++  V +KF
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 228          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.034e-29
Identity = 78/200 (39.00%), Postives = 115/200 (57.50%), Query Frame = 2
Query:  188 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            S+ F    LKP+LLR I   GFE+PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +    ++ ALVL  TRELA Q          YL ++      GG  ++     +   C Q+V GTPGR+L + + + L+++N +  +LDE D++L E+L  ++ + +IF   P   QV++ SAT+SK+I  + +KF
Sbjct:   22 SATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSKNC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKF 219          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.657e-29
Identity = 77/191 (40.31%), Postives = 109/191 (57.07%), Query Frame = 2
Query:  212 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL+L  TRELA QI         ++ +I      GG  ++     L  E P++VVGTPGR+  + + + L   +++ FILDE D+ML S      + +IF++ P   QV++ SAT+ +++  V  KF
Sbjct:   55 LKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFM-NITCHACIGGTAVREDMKAL-GEGPEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKF 242          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.657e-29
Identity = 81/200 (40.50%), Postives = 113/200 (56.50%), Query Frame = 2
Query:  188 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            S  F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + ALVL  TRELA QI         Y+ +++     GG  +K   + ++    Q+V GTPGR+L + +   L+ +NV+  ILDE D++L ESL  ++ + +IF   P   QV++ SAT+SK+I  V +KF
Sbjct:   22 SPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYM-NVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAACQVVVVSATMSKDILEVTKKF 220          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.657e-29
Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 766
            F DF L+ ELL  I ++GFE PS +Q E IP A+   D++ +AK+G GKTA FV+ TL+  +P   ++ AL++  TRELA Q          +   I   V  GG N++   D+++ NE   ++VGTPGR+L LA  K   L     F++DE DKML S D +  V++I    P + Q ++FSAT    ++
Sbjct:   31 FEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKML-SRDFKSLVEQILSFLPQNHQSLLFSATFPLTVK 217          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.470e-29
Identity = 79/196 (40.31%), Postives = 106/196 (54.08%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML S   +  + +IF+    + QV++ SAT+  ++  V +KF
Sbjct:   26 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKF 219          
BLAST of DY271323 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.470e-29
Identity = 79/196 (40.31%), Postives = 106/196 (54.08%), Query Frame = 2
Query:  197 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKF 784
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML S   +  + +IF+    + QV++ SAT+  ++  V +KF
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKF 227          
The following BLAST results are available for this feature:
BLAST of DY271323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_PONAB2.034e-2942.35Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE2.034e-2942.35Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_HUMAN2.034e-2942.35Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_BOVIN2.034e-2942.35Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
FAL1_KLULA2.034e-2939.00ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
IF4A_ASPOR2.657e-2940.31ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
FAL1_VANPO2.657e-2940.50ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
DHH1_ASHGO2.657e-2939.27ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
IF4A1_RABIT3.470e-2940.31Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR3.470e-2940.31Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YJ16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271323 ID=DY271323; Name=DY271323; organism=Citrus clementina; type=EST; length=1061bp
CTCTCGCCAAACTCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCCAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATCTCTTGACATGAGAAGAGATGTGCAAGAGATT
TTCAAGATGACTCCTCATGACAAGCAAGTAATGATGTTTTCCGCAACACT
CAGCAAGGAAATCCGCCCAGTCTGCCAGAAATTTTATGCAAGATCCAATG
GAAATTTTATGTGGATGAACAAGGCAAGTTGACTCCTTCTGGTCTTGGTC
CGCCTTCATTAAATTGAGTGGGCTGGAAAAAAACCGAAATTGGATGATCC
CCTTGAGCCTTGGAATTTAATCCAGTTGTTATTCTTGGTCAAAGGGGTTA
CCCAAGCACGGGAGTTAAAAAGTTTATTGGTAAAAAGGATTTTTCCTCTC
ATTTGCCTTCCCTTTGGGGCTGGGCCACCAAAAAAAGGGTTGACCCGGTT
CAAAAGGGTTC
back to top